Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000593g0280 Nicotiana tabacum HOM05D003261 ORTHO05D285224 4.9e-34 149.1 263 100.0
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 7.6e-19 98.6 66 72.7
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.9e-19 98.2 64 75.0
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.9e-19 98.2 64 75.0
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.9e-19 98.2 64 75.0
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.9e-19 98.2 64 75.0
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 9.9e-19 98.2 64 75.0
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 9.9e-19 98.2 64 75.0
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 1.3e-18 97.8 64 75.0
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 1.3e-18 97.8 64 73.4
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 1.7e-18 97.4 64 73.4
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 2.2e-18 97.1 64 73.4
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 2.2e-18 97.1 64 73.4
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.9e-18 96.7 64 73.4
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.9e-18 96.7 64 73.4
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 2.9e-18 96.7 64 73.4
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 3.8e-18 96.3 64 73.4
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 3.8e-18 96.3 52 80.8
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 3.8e-18 96.3 64 73.4
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 3.8e-18 96.3 64 73.4
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 3.8e-18 96.3 52 82.7
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 4.9e-18 95.9 51 84.3
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 4.9e-18 95.9 64 73.4
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 4.9e-18 95.9 64 71.9
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 4.9e-18 95.9 64 71.9
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 6.4e-18 95.5 66 69.7
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 6.4e-18 95.5 52 82.7
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 6.4e-18 95.5 64 71.9
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 8.4e-18 95.1 51 82.4
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 8.4e-18 95.1 64 71.9
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 8.4e-18 95.1 64 71.9
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 8.4e-18 95.1 49 87.8
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 8.4e-18 95.1 51 82.4
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 8.4e-18 95.1 52 80.8
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 8.4e-18 95.1 52 80.8
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 1.1e-17 94.7 64 70.3
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 1.1e-17 94.7 63 71.4
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 1.1e-17 94.7 51 82.4
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 1.4e-17 94.4 51 80.4
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.4e-17 94.4 66 68.2
MD00G1184900 Malus domestica HOM05D003261 ORTHO05D004230 1.4e-17 94.4 66 68.2
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 1.4e-17 94.4 64 71.9
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 1.4e-17 94.4 52 82.7
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 1.4e-17 94.4 52 78.8
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.9e-17 94.0 64 70.3
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.9e-17 94.0 64 70.3
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.9e-17 94.0 51 80.4
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.9e-17 94.0 51 80.4
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.9e-17 94.0 51 82.4
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 2.4e-17 93.6 51 82.4
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 2.4e-17 93.6 64 70.3
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 2.4e-17 93.6 64 70.3
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 2.4e-17 93.6 64 70.3
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 2.4e-17 93.6 52 78.8
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 2.4e-17 93.6 51 80.4
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 2.4e-17 93.6 64 70.3
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 3.2e-17 93.2 64 70.3
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 3.2e-17 93.2 64 70.3
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 3.2e-17 93.2 51 78.4
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 70.3
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 68.8
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 67.2
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 67.2
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 67.2
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 67.2
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 67.2
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 68.8
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 4.2e-17 92.8 51 78.4
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 4.2e-17 92.8 64 68.8
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 5.4e-17 92.4 64 70.3
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 5.4e-17 92.4 64 71.9
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 5.4e-17 92.4 64 70.3
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 5.4e-17 92.4 64 70.3
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 7.1e-17 92.0 64 68.8
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 7.1e-17 92.0 64 68.8
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 7.1e-17 92.0 64 68.8
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 7.1e-17 92.0 64 67.2
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 7.1e-17 92.0 51 78.4
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 9.3e-17 91.7 52 76.9
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 9.3e-17 91.7 62 71.0
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 9.3e-17 91.7 64 67.2
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 9.3e-17 91.7 64 67.2
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 9.3e-17 91.7 64 67.2
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.2e-16 91.3 51 78.4
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.2e-16 91.3 51 78.4
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.6e-16 90.9 64 68.8
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 1.6e-16 90.9 64 68.8
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 2.7e-16 90.1 49 81.6
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 2.7e-16 90.1 64 65.6
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 3.5e-16 89.7 66 65.2
PSO017G1819 Papaver somniferum HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 65.6
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 3.5e-16 89.7 64 68.8
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 4.6e-16 89.4 64 67.2
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 6.0e-16 89.0 64 68.8
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 6.0e-16 89.0 64 68.8
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 6.0e-16 89.0 64 68.8
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 6.0e-16 89.0 64 67.2
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 7.9e-16 88.6 64 67.2
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 7.9e-16 88.6 64 67.2
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 7.9e-16 88.6 64 65.6
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 7.9e-16 88.6 64 68.8
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 1.0e-15 88.2 64 65.6
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 1.0e-15 88.2 64 65.6
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 1.0e-15 88.2 64 65.6
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.3e-15 87.8 64 65.6
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 1.3e-15 87.8 64 67.2
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 1.3e-15 87.8 63 68.3
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 1.8e-15 87.4 49 77.6
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 1.8e-15 87.4 64 67.2
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.3e-15 87.0 49 79.6
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 2.3e-15 87.0 49 79.6
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 2.3e-15 87.0 49 77.6
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 3.9e-15 86.3 51 72.5
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 3.9e-15 86.3 64 62.5
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 5.1e-15 85.9 49 77.6
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 5.1e-15 85.9 52 69.2
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 1.1e-14 84.7 49 71.4
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.1e-14 84.7 64 62.5
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 1.1e-14 84.7 64 62.5
SMO340G0096 Selaginella moellendorffii HOM05D003261 ORTHO05D010935 1.1e-14 84.7 64 62.5
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 1.5e-14 84.3 51 70.6
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.5e-14 84.3 70 60.0
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 1.9e-14 84.0 64 65.6
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.9e-14 84.0 54 74.1
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 1.9e-14 84.0 48 77.1
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.9e-14 84.0 48 77.1
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.9e-14 84.0 51 70.6
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.9e-14 84.0 51 70.6
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 1.9e-14 84.0 64 59.4
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 2.5e-14 83.6 52 67.3
CBR_g46444 Chara braunii HOM05D003261 ORTHO05D004230 3.3e-14 83.2 51 70.6
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 4.3e-14 82.8 51 74.5
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 4.3e-14 82.8 50 70.0
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 7.4e-14 82.0 62 58.1
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 1.3e-13 81.3 65 64.6
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 1.3e-13 81.3 65 64.6
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 1.3e-13 81.3 49 73.5
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 1.6e-13 80.9 88 51.1
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 6.2e-13 79.0 44 79.5
FAN07G0835 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.1e-12 78.2 49 73.5
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 1.4e-12 77.8 49 71.4
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 9.0e-12 75.1 44 75.0
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 1.7e-10 70.9 49 61.2
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 2.2e-10 70.5 45 68.9
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 4.2e-09 66.2 38 73.7
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 5.5e-09 65.9 38 68.4
TPR.G20574 Trifolium pratense HOM05D003261 ORTHO05D004230 1.2e-08 64.7 51 62.7
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 1.6e-08 64.3 55 52.7
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.6e-08 64.3 44 63.6
Haze_18316 Corylus avellana HOM05D003261 ORTHO05D014021 1.0e-07 61.6 31 80.6
Nitab4.5_0002089g0060 Nicotiana tabacum HOM05D003261 ORTHO05D014021 1.0e-07 61.6 38 68.4
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 1.3e-07 61.2 38 71.1
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 1.3e-07 61.2 38 63.2
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 1.8e-07 60.8 53 56.6
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.8e-07 60.8 38 65.8
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 3.9e-07 59.7 38 63.2
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 3.9e-07 59.7 38 63.2
FAN17G2078 Fragaria x ananassa HOM05D003261 ORTHO05D014021 5.1e-07 59.3 34 76.5
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 6.7e-07 58.9 38 65.8
Nitab4.5_0000244g0390 Nicotiana tabacum HOM05D003261 ORTHO05D004230 8.7e-07 58.5 34 73.5
CBR_g46442 Chara braunii HOM05D003261 ORTHO05D004230 1.5e-06 57.8 38 55.3
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 1.5e-06 57.8 33 81.8
Medtr2g436500 Medicago truncatula HOM05D003261 ORTHO05D004230 4.3e-06 56.2 36 66.7


User provided reference genes

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