Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000308g0370 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.7e-63 245.7 116 100.0
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 4.3e-59 231.1 110 96.4
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.6e-58 229.2 110 97.3
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 1.6e-58 229.2 109 96.3
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 2.8e-58 228.4 110 95.5
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 6.2e-58 227.3 110 95.5
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 1.2e-56 223.0 110 91.8
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 2.6e-56 221.9 110 93.6
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.0e-55 219.9 110 90.9
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 1.0e-55 219.9 110 90.0
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.3e-55 219.5 110 90.9
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 2.9e-55 218.4 110 89.1
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 4.9e-55 217.6 110 89.1
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.9e-55 217.6 110 89.1
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 90.0
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 90.0
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 90.0
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 90.0
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 90.0
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 90.0
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 6.5e-55 217.2 110 89.1
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 8.4e-55 216.9 110 90.0
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 8.4e-55 216.9 110 89.1
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 8.4e-55 216.9 110 88.2
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 8.4e-55 216.9 110 89.1
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 8.4e-55 216.9 110 88.2
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.1e-54 216.5 110 87.3
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.1e-54 216.5 110 90.0
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 1.1e-54 216.5 110 89.1
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.1e-54 216.5 110 88.2
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.1e-54 216.5 110 90.0
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.4e-54 216.1 110 90.0
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 1.4e-54 216.1 110 90.0
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 1.4e-54 216.1 110 90.0
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.4e-54 216.1 110 90.0
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-54 216.1 110 90.0
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.9e-54 215.7 110 89.1
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.9e-54 215.7 110 89.1
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 1.9e-54 215.7 110 89.1
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.9e-54 215.7 110 89.1
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 2.5e-54 215.3 110 89.1
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 2.5e-54 215.3 110 89.1
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 2.5e-54 215.3 110 89.1
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 2.5e-54 215.3 110 89.1
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 3.2e-54 214.9 110 89.1
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 5.5e-54 214.2 110 89.1
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 5.5e-54 214.2 110 86.4
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 5.5e-54 214.2 110 90.0
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.5e-54 214.2 110 89.1
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 9.3e-54 213.4 110 89.1
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 9.3e-54 213.4 110 89.1
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 1.2e-53 213.0 110 89.1
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 1.6e-53 212.6 110 89.1
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 1.6e-53 212.6 111 88.3
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 2.1e-53 212.2 110 87.3
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 2.1e-53 212.2 110 88.2
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 2.1e-53 212.2 110 88.2
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 2.1e-53 212.2 110 88.2
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.7e-53 211.8 110 85.5
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.7e-53 211.8 110 86.4
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 2.7e-53 211.8 110 88.2
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 3.5e-53 211.5 110 86.4
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 3.5e-53 211.5 110 86.4
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 3.5e-53 211.5 110 86.4
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 3.5e-53 211.5 109 88.1
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.5e-53 211.5 109 88.1
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 4.6e-53 211.1 110 87.3
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 4.6e-53 211.1 110 85.5
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 4.6e-53 211.1 110 87.3
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 4.6e-53 211.1 110 87.3
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 4.6e-53 211.1 110 88.2
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 6.1e-53 210.7 110 87.3
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 6.1e-53 210.7 110 88.2
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 7.9e-53 210.3 109 89.0
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 7.9e-53 210.3 110 87.3
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 7.9e-53 210.3 110 86.4
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 7.9e-53 210.3 110 87.3
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.0e-52 209.9 110 84.5
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 1.0e-52 209.9 110 87.3
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 1.0e-52 209.9 110 86.4
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 1.0e-52 209.9 110 86.4
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.0e-52 209.9 110 86.4
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 1.3e-52 209.5 110 87.3
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.3e-52 209.5 110 87.3
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 1.3e-52 209.5 109 89.0
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.8e-52 209.1 110 87.3
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 1.8e-52 209.1 110 84.5
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.8e-52 209.1 110 88.2
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.3e-52 208.8 110 87.3
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.3e-52 208.8 110 84.5
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 3.0e-52 208.4 110 86.4
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.0e-52 208.4 110 87.3
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 3.0e-52 208.4 110 86.4
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 3.0e-52 208.4 110 86.4
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 3.9e-52 208.0 110 86.4
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 5.1e-52 207.6 109 86.2
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 5.1e-52 207.6 110 87.3
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 6.7e-52 207.2 110 87.3
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 6.7e-52 207.2 113 84.1
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 8.7e-52 206.8 110 86.4
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 8.7e-52 206.8 110 86.4
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.5e-51 206.1 109 85.3
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 5.7e-51 204.1 109 87.2
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 7.4e-51 203.8 110 86.4
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 9.7e-51 203.4 109 85.3
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.3e-50 203.0 110 86.4
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 1.6e-50 202.6 110 86.4
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.2e-50 202.2 110 81.8
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.2e-50 202.2 110 81.8
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 2.8e-50 201.8 109 86.2
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 3.7e-50 201.4 110 82.7
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.8e-50 201.1 122 78.7
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.8e-50 201.1 122 78.7
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.8e-50 201.1 122 78.7
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 6.3e-50 200.7 116 83.6
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 8.2e-50 200.3 110 81.8
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.4e-49 199.5 122 77.9
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 2.4e-49 198.7 110 80.0
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.6e-48 195.3 110 80.0
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.5e-48 194.5 110 78.2
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.5e-48 194.5 110 78.2
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 4.5e-48 194.5 110 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 7.7e-48 193.7 110 77.3
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 5.0e-47 191.0 109 78.9
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 6.5e-47 190.7 96 87.5
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.1e-46 189.9 108 84.3
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.9e-46 189.1 100 84.0
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.5e-46 188.7 110 77.3
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 5.5e-46 187.6 109 76.1
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 2.1e-45 185.7 109 78.0
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.4e-44 183.0 110 80.9
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.0e-44 181.8 111 73.0
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.3e-41 171.0 111 70.3
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.3e-41 171.0 111 70.3
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.6e-40 168.7 89 87.6
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 3.4e-40 168.3 110 74.5
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 4.5e-40 167.9 85 90.6
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 6.5e-39 164.1 85 89.4
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 8.5e-39 163.7 110 71.8
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.1e-35 153.3 110 66.4
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-33 146.7 109 68.8
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.6e-32 142.1 101 71.3
Peaxi162Scf00286g00237 Petunia axillaris HOM05D003708 ORTHO05D004452 2.9e-31 138.7 73 87.7
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 3.7e-26 121.7 106 62.3
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 9.1e-25 117.1 163 43.6
CDE11G0718 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 5.7e-19 97.8 76 60.5
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 2.7e-16 89.0 110 48.2
Peaxi162Scf01320g00019 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-15 86.7 47 80.9
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.2e-13 80.1 56 69.6
MD11G1199400 Malus domestica HOM05D003708 ORTHO05D004452 7.0e-09 64.3 32 84.4


User provided reference genes

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