Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000144g0070 Nicotiana tabacum HOM05D000104 ORTHO05D019545 8.5e-76 287.0 149 100.0
Nitab4.5_0000180g0020 Nicotiana tabacum HOM05D000104 ORTHO05D019545 2.7e-74 282.0 149 98.0
Sopen01g031470 Solanum pennellii HOM05D000104 ORTHO05D006391 2.7e-45 185.7 149 72.5
Solyc01g079700.3 Solanum lycopersicum HOM05D000104 ORTHO05D019545 8.6e-44 180.6 121 82.6
CAN.G69.9 Capsicum annuum HOM05D000104 ORTHO05D006391 2.1e-42 176.0 149 69.8
Peaxi162Scf00437g00635 Petunia axillaris HOM05D000104 ORTHO05D019545 6.2e-42 174.5 152 69.7
Hund12165 Selenicereus undatus HOM05D000104 ORTHO05D006391 3.5e-29 132.1 118 61.0
Dinv44505 Davidia involucrata HOM05D000104 ORTHO05D006391 5.1e-28 128.3 123 56.1
Rhsim02G0022300 Rhododendron simsii HOM05D000104 ORTHO05D006391 1.6e-26 123.2 120 53.3
MSTRG.10001 Avicennia marina HOM05D000104 ORTHO05D006391 3.6e-26 122.1 153 49.0
GSVIVG01017921001 Vitis vinifera HOM05D000104 ORTHO05D006391 1.1e-25 120.6 117 54.7
Actinidia40166 Actinidia chinensis HOM05D000104 ORTHO05D006391 2.4e-25 119.4 116 53.4
Oeu042797.1 Olea europaea HOM05D000104 ORTHO05D006391 2.4e-25 119.4 163 49.1
EL10As3g23347 Beta vulgaris HOM05D000104 ORTHO05D006391 5.2e-25 118.2 127 51.2
AUR62038085 Chenopodium quinoa HOM05D000104 ORTHO05D006391 9.0e-25 117.5 118 51.7
AUR62038161 Chenopodium quinoa HOM05D000104 ORTHO05D006391 9.0e-25 117.5 151 47.7
Sc19g0004350 Simmondsia chinensis HOM05D000104 ORTHO05D006391 2.6e-24 115.9 121 52.1
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 3.4e-24 115.5 115 53.9
Lj3A741T68 Lonicera japonica HOM05D000104 ORTHO05D006391 1.7e-23 113.2 122 48.4
Ciclev10004335m.g Citrus clementina HOM05D000104 ORTHO05D006391 2.2e-23 112.8 117 54.7
Cpa.g.c45714 Carica papaya HOM05D000104 ORTHO05D019545 3.8e-23 112.1 130 49.2
Ah.04g154480 Amaranthus hybridus HOM05D000104 ORTHO05D006391 4.9e-23 111.7 125 48.0
CiPaw.02G094700 Carya illinoinensis HOM05D000104 ORTHO05D006391 6.4e-23 111.3 120 54.2
Potri.008G149900 Populus trichocarpa HOM05D000104 ORTHO05D006391 3.2e-22 109.0 116 48.3
MSTRG.4011 Avicennia marina HOM05D000104 ORTHO05D006391 4.2e-22 108.6 153 45.8
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.4e-22 108.2 156 44.9
CiPaw.01G162800 Carya illinoinensis HOM05D000104 ORTHO05D006391 7.1e-22 107.8 122 52.5
SGA_v2.0_scaffold39G15292 Striga asiatica HOM05D000104 ORTHO05D006391 7.1e-22 107.8 158 47.5
TAR636G2934 Trochodendron aralioides HOM05D000104 ORTHO05D006391 9.3e-22 107.5 117 51.3
vmacro15323 Vaccinium macrocarpon HOM05D000104 ORTHO05D006391 9.3e-22 107.5 161 42.9
QL06p003521 Quercus lobata HOM05D000104 ORTHO05D006391 1.6e-21 106.7 118 51.7
Migut.G00313 Erythranthe guttata HOM05D000104 ORTHO05D006391 2.7e-21 105.9 121 52.1
Prupe.1G154600 Prunus persica HOM05D000104 ORTHO05D006391 2.7e-21 105.9 118 51.7
unitig_749.g14068 Utricularia gibba HOM05D000104 ORTHO05D006391 2.7e-21 105.9 150 46.0
AT3G06010 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 4.6e-21 105.1 119 48.7
SalBow2G2646 Salvia bowleyana HOM05D000104 ORTHO05D006391 6.0e-21 104.8 149 45.6
PSO302G0005 Papaver somniferum HOM05D000104 ORTHO05D006391 7.8e-21 104.4 141 44.0
Aa31LG5G16490 Aethionema arabicum HOM05D000104 ORTHO05D006391 1.7e-20 103.2 122 47.5
Thecc.04G226600 Theobroma cacao HOM05D000104 ORTHO05D006391 1.7e-20 103.2 117 46.2
Aqoxy2G03333 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 3.0e-20 102.4 115 50.4
COL.COLO4_06204 Corchorus olitorius HOM05D000104 ORTHO05D006391 3.0e-20 102.4 117 47.9
Thhalv10019947m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 3.0e-20 102.4 118 49.2
Atru.chr4.2520 Acer truncatum HOM05D000104 ORTHO05D006391 3.9e-20 102.1 127 47.2
BolC1t05642H Brassica oleracea HOM05D000104 ORTHO05D006391 5.1e-20 101.7 126 48.4
Nn1g02228 Nelumbo nucifera HOM05D000104 ORTHO05D006391 6.6e-20 101.3 119 48.7
Sabra08G0114000 Salix brachista HOM05D000104 ORTHO05D006391 6.6e-20 101.3 126 44.4
AL3G16830 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 1.1e-19 100.5 119 48.7
MD13G1186900 Malus domestica HOM05D000104 ORTHO05D006391 1.1e-19 100.5 128 46.9
Manes.03G181600 Manihot esculenta HOM05D000104 ORTHO05D006391 1.1e-19 100.5 119 45.4
Aqoxy1G03114 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 2.5e-19 99.4 114 51.8
Potri.010G091200 Populus trichocarpa HOM05D000104 ORTHO05D006391 2.5e-19 99.4 126 47.6
Sp3g04950 Schrenkiella parvula HOM05D000104 ORTHO05D006391 2.5e-19 99.4 118 47.5
PSO170G0309 Papaver somniferum HOM05D000104 ORTHO05D006391 5.6e-19 98.2 130 45.4
MD16G1187800 Malus domestica HOM05D000104 ORTHO05D006391 7.3e-19 97.8 115 47.8
HanXRQChr09g0247211 Helianthus annuus HOM05D000104 ORTHO05D006391 1.3e-18 97.1 118 49.2
BraA01t04455Z Brassica rapa HOM05D000104 ORTHO05D006391 1.6e-18 96.7 126 45.2
PSO566G0247 Papaver somniferum HOM05D000104 ORTHO05D006391 1.6e-18 96.7 142 38.7
Duzib151G0379 Durio zibethinus HOM05D000104 ORTHO05D006391 2.1e-18 96.3 141 42.6
TWI73G0072 Tripterygium wilfordii HOM05D000104 ORTHO05D006391 2.1e-18 96.3 115 47.0
Haze_00933 Corylus avellana HOM05D000104 ORTHO05D006391 2.8e-18 95.9 125 47.2
Cfa015609 Carpinus fangiana HOM05D000104 ORTHO05D006391 6.2e-18 94.7 125 46.4
THA.LOC104818783 Tarenaya hassleriana HOM05D000104 ORTHO05D006391 8.1e-18 94.4 121 43.8
Carub.0003s0543 Capsella rubella HOM05D000104 ORTHO05D006391 1.1e-17 94.0 119 44.5
DCAR_027168 Daucus carota HOM05D000104 ORTHO05D019545 1.1e-17 94.0 120 46.7
CARHR080510 Cardamine hirsuta HOM05D000104 ORTHO05D006391 1.4e-17 93.6 118 44.9
Nn4g26250 Nelumbo nucifera HOM05D000104 ORTHO05D006391 2.4e-17 92.8 124 44.4
Carub.0006s1764 Capsella rubella HOM05D000104 ORTHO05D006391 3.1e-17 92.4 119 43.7
Ca_10932_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006391 1.2e-16 90.5 124 41.1
Gohir.A10G118000 Gossypium hirsutum HOM05D000104 ORTHO05D006391 1.2e-16 90.5 128 45.3
Duzib212G0338 Durio zibethinus HOM05D000104 ORTHO05D006391 1.5e-16 90.1 125 43.2
AL6G30790 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 2.0e-16 89.7 121 39.7
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 2.0e-16 89.7 113 45.1
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.0e-16 89.7 113 45.1
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.0e-16 89.7 113 45.1
Gohir.D10G148800 Gossypium hirsutum HOM05D000104 ORTHO05D006391 2.0e-16 89.7 128 45.3
Gorai.011G166100 Gossypium raimondii HOM05D000104 ORTHO05D006391 2.0e-16 89.7 128 45.3
Manes.15G026000 Manihot esculenta HOM05D000104 ORTHO05D006391 2.0e-16 89.7 115 45.2
HanXRQChr09g0247251 Helianthus annuus HOM05D000104 ORTHO05D006391 4.5e-16 88.6 127 44.1
FvH4_4g14970 Fragaria vesca HOM05D000104 ORTHO05D006391 5.8e-16 88.2 113 44.2
FAN07G1560 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.8e-16 88.2 113 44.2
RcHm_v2.0_Chr4g0417121 Rosa chinensis HOM05D000104 ORTHO05D006391 9.9e-16 87.4 113 43.4
CANSAT78G1321 Cannabis sativa HOM05D000104 ORTHO05D006391 1.3e-15 87.0 113 43.4
AT5G19310 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 2.9e-15 85.9 120 40.0
Lsat_1_v5_gn_7_66780 Lactuca sativa HOM05D000104 ORTHO05D006391 2.9e-15 85.9 92 54.3
HPP92_009639 Vanilla planifolia HOM05D000104 ORTHO05D006391 2.9e-15 85.9 126 46.0
Thhalv10015665m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 1.1e-14 84.0 117 43.6
Phvul.007G054000 Phaseolus vulgaris HOM05D000104 ORTHO05D006391 1.4e-14 83.6 123 40.7
Sed0009592 Sechium edule HOM05D000104 ORTHO05D006391 1.4e-14 83.6 115 46.1
ATR0626G379 Amborella trichopoda HOM05D000104 ORTHO05D006391 3.2e-14 82.4 111 42.3
Psat6g209840 Pisum sativum HOM05D000104 ORTHO05D006391 3.2e-14 82.4 120 41.7
Glyma.20G143200 Glycine max HOM05D000104 ORTHO05D006391 7.1e-14 81.3 117 38.5
Sp6g25110 Schrenkiella parvula HOM05D000104 ORTHO05D006391 9.3e-14 80.9 120 43.3
Zm00001eb417900 Zea mays HOM05D000104 ORTHO05D006391 9.3e-14 80.9 133 39.8
Os05g0144300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006391 1.6e-13 80.1 127 42.5
Lalb_Chr02g0144671 Lupinus albus HOM05D000104 ORTHO05D006391 2.1e-13 79.7 109 43.1
arahy.Tifrunner.gnm1.ann1.JYJ007 Arachis hypogaea HOM05D000104 ORTHO05D006391 3.5e-13 79.0 119 39.5
CARHR193660 Cardamine hirsuta HOM05D000104 ORTHO05D006391 3.5e-13 79.0 113 39.8
CDE04G0057 Ceratophyllum demersum HOM05D000104 ORTHO05D006391 3.5e-13 79.0 125 38.4
Glyma.10G250500 Glycine max HOM05D000104 ORTHO05D006391 4.6e-13 78.6 115 39.1
Zm00001eb108690 Zea mays HOM05D000104 ORTHO05D006391 4.6e-13 78.6 158 36.1
Lj5g0020197 Lotus japonicus HOM05D000104 ORTHO05D006391 6.0e-13 78.2 117 42.7
TPR.G5483 Trifolium pratense HOM05D000104 ORTHO05D006391 7.9e-13 77.8 117 40.2
VMungo0720G1811 Vigna mungo HOM05D000104 ORTHO05D006391 7.9e-13 77.8 109 41.3
arahy.Tifrunner.gnm1.ann1.6R1BCK Arachis hypogaea HOM05D000104 ORTHO05D006391 1.0e-12 77.4 125 37.6
Eucgr.B01100 Eucalyptus grandis HOM05D000104 ORTHO05D006391 1.3e-12 77.0 132 37.9
PGR142G0455 Punica granatum HOM05D000104 ORTHO05D006391 1.8e-12 76.6 118 40.7
Glyma.11G004100 Glycine max HOM05D000104 ORTHO05D006391 2.3e-12 76.3 113 39.8
ClCG06G005980 Citrullus lanatus HOM05D000104 ORTHO05D006391 3.0e-12 75.9 115 40.0
arahy.Tifrunner.gnm1.ann1.CDG6HX Arachis hypogaea HOM05D000104 ORTHO05D006391 3.9e-12 75.5 125 36.8
Cc03_g03400 Coffea canephora HOM05D000104 ORTHO05D006391 5.1e-12 75.1 54 66.7
arahy.Tifrunner.gnm1.ann1.I4QQIE Arachis hypogaea HOM05D000104 ORTHO05D006391 6.7e-12 74.7 120 37.5
Ah.02g119180 Amaranthus hybridus HOM05D000104 ORTHO05D019545 8.7e-12 74.3 103 41.7
Medtr1g105050 Medicago truncatula HOM05D000104 ORTHO05D006391 8.7e-12 74.3 117 39.3
Rhsim04G0204200 Rhododendron simsii HOM05D000104 ORTHO05D006391 1.9e-11 73.2 107 45.8
CsaV3_6G038290 Cucumis sativus L. HOM05D000104 ORTHO05D006391 4.3e-11 72.0 120 39.2
MELO3C014493.2 Cucumis melo HOM05D000104 ORTHO05D006391 9.6e-11 70.9 120 38.3
Dinv38416 Davidia involucrata HOM05D000104 ORTHO05D006391 3.7e-10 68.9 77 49.4
TPR.G37980 Trifolium pratense HOM05D000104 ORTHO05D006391 3.7e-10 68.9 109 40.4
Psat4g211240 Pisum sativum HOM05D000104 ORTHO05D006391 3.1e-09 65.9 109 39.4
ECA234G3449 Erigeron canadensis HOM05D000104 ORTHO05D006391 6.9e-09 64.7 117 38.5
Actinidia23493 Actinidia chinensis HOM05D000104 ORTHO05D006391 2.2e-07 59.7 41 61.0
DCAR_002397 Daucus carota HOM05D000104 ORTHO05D006391 2.2e-07 59.7 53 52.8
Lj1g0024868 Lotus japonicus HOM05D000104 ORTHO05D006391 4.9e-07 58.5 109 37.6
Medtr5g005840 Medicago truncatula HOM05D000104 ORTHO05D006391 1.4e-06 57.0 109 34.9
SEGI_40932 Sequoiadendron giganteum HOM05D000104 ORTHO05D006391 2.4e-06 56.2 150 30.7


User provided reference genes

Program Settings