Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1537.3 753 100.0
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1474.9 791 92.5
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 802 79.6
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1285.8 802 79.2
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 802 78.8
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 790 79.9
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1196.8 810 74.2
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1179.1 807 72.7
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1174.8 810 72.3
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 809 72.1
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 801 72.9
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 810 71.6
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1169.8 807 72.1
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1168.3 805 71.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1166.0 806 71.5
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1161.0 807 71.0
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1160.2 806 71.1
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1158.7 806 71.3
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1158.7 808 70.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 809 70.8
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 808 70.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1155.2 809 71.4
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1155.2 807 71.1
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1153.7 807 71.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 807 70.3
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 801 71.2
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1152.5 806 71.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1152.1 809 70.6
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1151.7 807 70.0
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1149.4 817 69.8
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1146.7 811 70.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1145.6 809 70.5
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1145.6 795 71.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1145.6 807 69.9
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1145.2 811 69.8
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1144.4 811 69.7
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1142.9 810 70.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1142.5 807 70.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1140.9 809 71.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1140.6 807 70.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 808 70.9
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 809 71.0
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1139.8 809 70.7
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1138.6 808 69.1
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1137.9 809 69.0
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1137.5 806 69.4
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1136.3 809 69.1
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1135.9 811 69.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1134.0 868 66.1
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1133.2 806 68.9
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1132.5 774 73.8
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1131.3 808 69.8
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1130.2 806 70.5
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1129.4 783 71.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1128.2 797 69.9
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1127.9 801 69.0
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1126.3 805 69.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1125.9 810 69.1
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1124.8 807 68.8
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1119.8 805 69.4
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1116.3 808 68.8
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1115.5 805 68.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1115.5 809 69.5
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1114.0 803 71.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1113.6 803 67.9
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1111.3 804 69.0
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1111.3 816 67.8
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1109.0 805 67.5
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1107.8 806 68.1
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 807 66.5
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 803 67.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1098.6 802 67.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1097.0 802 66.5
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 802 66.5
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1096.3 805 67.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1095.5 886 62.6
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 802 66.6
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1093.2 803 66.4
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1092.8 808 67.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1091.3 801 66.8
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1091.3 799 66.5
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1090.9 807 67.3
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 802 66.5
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 803 66.5
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 801 66.9
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 802 66.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 802 66.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 803 66.5
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1086.2 803 66.0
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1085.1 802 66.0
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1084.7 802 66.3
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1077.4 804 66.4
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 5.2e-312 1074.3 828 66.2
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 6.6e-310 1067.0 800 65.5
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 2.6e-306 1055.0 805 63.6
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 9.9e-306 1053.1 803 64.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 8.4e-305 1050.0 805 63.7
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 1.1e-304 1049.7 859 62.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 1.9e-304 1048.9 858 61.4
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 1.9e-304 1048.9 802 65.2
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 5.4e-304 1047.3 911 60.8
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 7.1e-304 1047.0 806 65.6
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 4.0e-299 1031.2 806 62.9
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 7.1e-296 1020.4 819 64.2
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 9.3e-296 1020.0 776 65.6
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.1e-294 1014.2 746 69.0
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 2.1e-292 1008.8 783 66.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 1.3e-289 999.6 761 65.0
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 5.3e-283 977.6 962 55.3
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 2.9e-281 971.8 814 60.4
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.2e-272 941.8 819 58.0
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.3e-268 929.9 790 59.9
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 7.5e-261 904.0 810 60.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 6.5e-257 891.0 795 56.1
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.5e-253 879.8 605 73.1
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 4.3e-200 702.2 781 51.9
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.1e-171 607.8 851 41.6
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 4.3e-160 569.3 769 45.6
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 6.1e-146 522.3 824 38.7
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.4e-142 510.4 334 74.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.4e-134 482.6 931 33.8
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 5.4e-134 482.6 831 36.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 4.6e-117 426.4 411 54.3
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 9.2e-102 375.6 333 59.8
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 5.6e-91 339.7 198 83.3
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.6e-82 310.5 316 52.5
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.9e-79 300.8 221 67.0
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.2e-71 274.6 223 60.5
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 2.7e-69 267.7 171 73.1
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 4.6e-53 213.8 634 28.7
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.6e-45 188.7 141 67.4
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.5e-40 172.2 265 44.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 9.4e-38 162.9 101 74.3
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 5.2e-36 157.1 191 49.2
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.1e-35 156.0 100 73.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 8.5e-31 139.8 100 64.0
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.0e-28 131.3 94 67.0
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 4.0e-28 131.0 176 44.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.1e-25 122.9 80 77.5
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.1e-25 121.3 119 56.3
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 5.3e-25 120.6 116 50.9
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.0e-23 116.3 121 53.7
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.9e-23 114.8 176 41.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 3.8e-23 114.4 260 31.5
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 9.4e-22 109.8 109 54.1
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.7e-21 108.2 181 39.2
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 8.0e-21 106.7 54 87.0
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.0e-20 106.3 69 75.4
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.4e-17 95.9 59 78.0
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.9e-15 88.2 68 64.7
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 5.0e-15 87.4 72 56.9
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.2e-13 82.8 145 39.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 6.1e-13 80.5 93 46.2
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 2.6e-11 75.1 87 51.7
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 2.2e-10 72.0 60 51.7
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 3.1e-09 68.2 75 49.3
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 2.9e-07 61.6 322 26.1
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.8e-07 61.2 65 50.8
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 5.0e-07 60.8 322 26.1
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.6e-07 60.5 65 50.8
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.6e-07 60.5 89 43.8
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.5e-06 58.5 62 51.6
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.5e-06 58.5 65 47.7
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.3e-06 57.0 62 50.0
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.5e-06 56.6 89 41.6
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.5e-06 56.6 62 51.6


User provided reference genes

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