Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.2e-265 918.3 443 100.0
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 6.6e-140 501.5 318 81.8
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 6.4e-127 458.4 322 76.4
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 1.1e-126 457.6 319 75.5
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 1.2e-125 454.1 323 75.2
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 2.7e-125 453.0 323 74.9
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 2.8e-122 443.0 323 74.6
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 1.5e-115 420.6 292 74.0
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 7.3e-115 418.3 259 79.2
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 1.2e-114 417.5 327 69.1
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 4.7e-114 415.6 259 78.4
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 8.1e-114 414.8 289 73.0
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 1.1e-113 414.5 259 78.0
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 1.1e-113 414.5 259 78.0
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 1.4e-113 414.1 258 79.5
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 1.4e-113 414.1 311 70.7
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 2.3e-113 413.3 296 73.0
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 3.1e-113 412.9 304 71.7
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 3.1e-113 412.9 257 79.0
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 4.0e-113 412.5 274 75.5
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 4.0e-113 412.5 289 72.0
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 5.2e-113 412.1 295 72.2
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 8.9e-113 411.4 304 71.7
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 1.2e-112 411.0 305 71.1
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 1.2e-112 411.0 257 78.6
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 1.2e-112 411.0 271 76.4
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 1.2e-112 411.0 289 74.0
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 1.5e-112 410.6 258 78.3
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 1.5e-112 410.6 259 77.6
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 1.5e-112 410.6 329 66.3
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 1.5e-112 410.6 319 68.3
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 2.0e-112 410.2 257 78.6
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 3.4e-112 409.5 284 73.6
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 5.8e-112 408.7 258 77.1
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 5.8e-112 408.7 318 68.2
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 7.6e-112 408.3 259 77.6
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 7.6e-112 408.3 257 77.8
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 7.6e-112 408.3 285 73.3
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 1.3e-111 407.5 277 74.0
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 4.9e-111 405.6 258 76.7
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.9e-111 405.6 257 77.8
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 4.9e-111 405.6 254 78.3
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 6.4e-111 405.2 286 71.7
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 6.4e-111 405.2 282 72.0
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 8.3e-111 404.8 310 69.4
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.1e-110 404.4 310 69.4
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 1.1e-110 404.4 275 74.2
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 1.1e-110 404.4 332 64.5
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 1.4e-110 404.1 299 69.9
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 1.4e-110 404.1 316 67.1
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 1.4e-110 404.1 257 77.0
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 1.4e-110 404.1 318 68.2
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 2.4e-110 403.3 314 67.8
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 4.1e-110 402.5 257 76.7
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 4.1e-110 402.5 257 77.4
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 4.1e-110 402.5 317 66.9
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 5.4e-110 402.1 258 76.4
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 7.1e-110 401.7 310 66.8
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 7.1e-110 401.7 314 66.2
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 7.1e-110 401.7 292 69.5
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.6e-109 400.6 316 65.5
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 2.1e-109 400.2 258 76.4
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 2.1e-109 400.2 274 73.7
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 2.1e-109 400.2 299 69.6
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 3.5e-109 399.4 304 70.1
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 3.5e-109 399.4 269 74.3
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 3.5e-109 399.4 325 65.2
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 6.0e-109 398.7 277 71.1
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 6.0e-109 398.7 259 75.7
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 6.0e-109 398.7 259 75.3
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 7.8e-109 398.3 257 76.7
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 1.0e-108 397.9 290 70.3
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 1.3e-108 397.5 265 74.0
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 1.7e-108 397.1 277 71.1
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 1.7e-108 397.1 259 74.9
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 2.3e-108 396.7 287 70.0
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 2.3e-108 396.7 287 70.0
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 3.0e-108 396.4 311 66.2
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 3.0e-108 396.4 259 75.3
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 3.9e-108 396.0 298 66.8
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 3.9e-108 396.0 269 74.3
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 3.9e-108 396.0 315 65.1
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 3.9e-108 396.0 269 72.1
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 6.6e-108 395.2 257 75.5
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 6.6e-108 395.2 257 75.5
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 6.6e-108 395.2 259 74.9
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 1.1e-107 394.4 273 72.2
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.1e-107 394.4 277 71.1
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 1.1e-107 394.4 257 75.5
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 1.5e-107 394.0 269 74.0
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 1.5e-107 394.0 310 67.1
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.5e-107 394.0 263 73.0
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 1.9e-107 393.7 302 66.9
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 1.9e-107 393.7 275 72.4
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 2.5e-107 393.3 293 68.6
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 2.5e-107 393.3 277 70.4
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 3.3e-107 392.9 284 70.8
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 4.3e-107 392.5 269 72.5
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 4.3e-107 392.5 269 72.5
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 4.3e-107 392.5 277 71.1
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 5.6e-107 392.1 298 67.4
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 7.3e-107 391.7 257 73.9
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 9.6e-107 391.3 259 73.7
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 1.2e-106 391.0 270 72.6
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 1.2e-106 391.0 270 72.6
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 2.1e-106 390.2 259 73.4
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 2.1e-106 390.2 275 72.0
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 2.8e-106 389.8 298 67.4
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 2.8e-106 389.8 298 67.4
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 2.8e-106 389.8 270 73.3
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 2.8e-106 389.8 284 70.1
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 3.6e-106 389.4 266 71.4
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 3.6e-106 389.4 298 67.4
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 3.6e-106 389.4 296 67.6
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 4.7e-106 389.0 271 72.3
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 4.7e-106 389.0 264 72.7
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 4.7e-106 389.0 264 72.7
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 4.7e-106 389.0 264 72.7
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 4.7e-106 389.0 304 66.8
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 8.1e-106 388.3 308 65.6
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 1.4e-105 387.5 307 65.1
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 1.8e-105 387.1 308 64.6
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 3.1e-105 386.3 298 67.1
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 4.0e-105 386.0 254 75.6
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 8.9e-105 384.8 298 67.8
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 8.9e-105 384.8 306 65.4
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 1.2e-104 384.4 280 70.7
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 1.2e-104 384.4 304 66.1
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 3.4e-104 382.9 295 66.1
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 4.4e-104 382.5 293 66.6
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 4.4e-104 382.5 290 67.6
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 2.2e-103 380.2 299 67.6
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 2.2e-103 380.2 295 65.8
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 3.8e-103 379.4 302 65.9
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 4.9e-103 379.0 296 66.6
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 4.9e-103 379.0 273 68.1
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 6.4e-103 378.6 259 71.0
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.4e-102 377.5 304 65.1
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 1.4e-102 377.5 302 65.2
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.4e-102 377.5 244 75.8
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 4.2e-102 375.9 266 68.8
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 5.4e-102 375.6 287 66.2
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 7.1e-102 375.2 257 71.2
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 1.2e-101 374.4 270 71.5
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 2.7e-101 373.2 271 69.0
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 1.0e-100 371.3 248 71.8
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 1.7e-100 370.5 257 69.3
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 4.3e-99 365.9 309 62.1
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 4.3e-99 365.9 259 71.0
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 2.8e-98 363.2 372 55.4
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 1.5e-96 357.5 254 69.3
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 2.6e-96 356.7 266 67.7
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 1.9e-94 350.5 255 71.4
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 4.6e-93 345.9 235 73.2
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 4.6e-93 345.9 265 65.7
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 1.9e-91 340.5 255 67.5
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 4.8e-90 335.9 220 75.0
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 5.3e-89 332.4 226 72.6
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 6.9e-89 332.0 220 74.5
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 9.0e-89 331.6 261 65.9
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 1.5e-88 330.9 258 63.2
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 8.4e-87 325.1 222 71.2
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 3.7e-82 309.7 262 62.6
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 1.4e-78 297.7 219 68.5
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 1.3e-74 284.6 153 85.0
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 4.3e-67 259.6 242 59.9
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 1.6e-66 257.7 186 69.4
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 5.1e-60 236.1 119 90.8
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 4.5e-56 223.0 278 43.9
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-49 199.5 249 44.2
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 5.9e-48 196.1 312 38.5
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 1.3e-42 178.3 94 83.0
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 8.5e-39 165.6 284 33.8
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 7.2e-38 162.5 264 38.3
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 2.3e-28 131.0 149 49.7
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 1.5e-27 128.3 121 62.0
TPR.G14062 Trifolium pratense HOM05D001872 ORTHO05D001859 5.9e-24 116.3 132 53.8
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 2.1e-21 107.8 65 76.9
PGSC0003DMG400012082 Solanum tuberosum HOM05D003800 ORTHO05D004549 4.7e-21 106.7 102 66.7
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 6.1e-21 106.3 74 73.0
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 6.1e-21 106.3 74 73.0
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 5.7e-19 99.8 84 59.5
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.9e-18 97.4 84 58.3
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 4.3e-14 83.6 103 49.5
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 4.1e-09 67.0 67 53.7


User provided reference genes

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