Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1357.4 704 100.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1313.5 695 98.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1281.5 722 92.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1276.9 693 95.4
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1276.2 693 95.1
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1275.8 704 94.3
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1234.2 716 90.9
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1222.6 692 89.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1211.8 692 89.6
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1203.7 706 87.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1202.6 694 87.6
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1197.6 704 85.9
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 708 86.6
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 695 87.1
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 700 87.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1186.8 708 85.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 694 86.5
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1185.6 695 85.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 694 86.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 689 87.1
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 692 86.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 704 85.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1183.3 704 84.9
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1182.9 704 84.9
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1176.8 693 86.3
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 736 82.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1174.8 708 84.7
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1174.8 666 92.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 687 87.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 719 83.7
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 696 85.3
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 694 85.4
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 708 83.5
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 689 84.9
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 704 84.1
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 704 84.1
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 704 84.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 708 83.5
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 705 84.0
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 683 86.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 706 84.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 704 84.1
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 708 83.3
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 705 83.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 704 84.4
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 731 82.4
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 698 85.1
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 704 83.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 698 84.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 698 82.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 706 83.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 714 84.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 694 83.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 668 87.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 705 83.1
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 694 84.4
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 779 77.9
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 708 83.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 740 80.1
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 668 87.0
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 733 80.8
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 698 82.2
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 698 84.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 698 82.1
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 694 82.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 689 84.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 688 83.0
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1136.3 694 82.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 694 82.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 712 82.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 689 83.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 688 82.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 694 83.6
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 694 82.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 694 82.0
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 694 82.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 694 82.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 685 83.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 694 83.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 695 82.2
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 704 82.4
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 709 81.5
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 690 83.6
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 708 80.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 708 80.6
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 696 81.2
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 687 82.7
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 696 82.6
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 694 81.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 696 80.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 740 78.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 696 79.6
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1087.8 682 80.2
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 698 77.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1080.5 736 75.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.1e-309 1066.2 697 77.2
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 6.9e-309 1063.5 707 77.8
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.6e-305 1050.8 696 76.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.0e-296 1023.1 746 70.6
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.6e-286 989.2 591 83.6
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.5e-282 975.3 618 79.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.2e-282 974.9 631 79.6
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.0e-276 955.7 705 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.0e-276 955.7 705 68.1
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.5e-276 954.5 682 69.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.7e-270 936.0 700 68.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.7e-270 934.9 691 68.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.3e-270 934.1 584 79.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 6.7e-264 914.1 683 71.7
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.0e-263 912.5 589 79.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 5.7e-263 911.0 566 80.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.1e-261 903.7 554 82.1
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 5.3e-253 877.9 503 87.9
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.4e-248 863.2 676 68.5
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.5e-234 813.9 480 85.4
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.0e-228 796.2 681 59.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.3e-216 756.1 682 56.2
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.0e-200 702.2 423 81.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.0e-199 699.9 466 79.0
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.0e-154 550.4 328 81.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.8e-153 546.6 733 43.4
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.1e-144 518.1 775 38.2
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 7.7e-135 485.3 280 86.1
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.5e-127 459.5 273 83.2
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 3.4e-122 443.4 269 82.9
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.7e-119 433.7 359 62.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 7.8e-111 405.6 740 34.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 7.8e-111 405.6 253 80.6
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.9e-110 403.3 237 83.5
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.0e-110 402.9 233 84.1
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.3e-109 399.8 261 80.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.1e-99 368.6 247 77.7
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.9e-81 307.4 182 80.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 4.3e-77 293.5 215 71.2
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.8e-76 290.0 193 80.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.3e-69 267.3 195 70.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.4e-69 266.2 148 82.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-60 238.8 155 69.0
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-60 238.4 192 70.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.7e-57 228.4 156 75.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-56 225.3 122 96.7
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 7.9e-55 219.5 167 69.5
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.0e-54 219.2 180 68.9
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.0e-54 219.2 197 62.9
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 8.5e-49 199.5 488 28.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.9e-47 193.0 114 86.0
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.4e-42 177.6 111 85.6
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.5e-40 170.2 102 80.4
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.0e-38 164.5 111 73.9
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 9.7e-29 132.9 100 69.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-28 132.5 151 52.3
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-26 125.9 100 66.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-26 125.9 100 66.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.5e-25 119.8 80 76.2
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 2.5e-24 118.2 72 80.6
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-22 111.7 88 65.9
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 9.8e-21 106.3 113 54.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.7e-20 104.4 63 76.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 6.3e-20 103.6 69 68.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.4e-19 100.5 57 82.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.1e-19 99.8 93 61.3
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.2e-18 99.4 77 64.9
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 4.5e-18 97.4 59 78.0
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.2e-15 89.4 65 72.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 3.7e-12 77.8 78 50.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.7e-10 71.6 45 75.6
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 5.9e-10 70.5 40 85.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.0e-09 67.4 57 56.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.8e-06 58.9 59 49.2


User provided reference genes

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