Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.0e-124 449.1 225 100.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.5e-116 420.6 224 94.6
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.7e-110 402.1 225 89.3
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-110 400.6 225 88.9
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.0e-109 400.2 225 88.0
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-109 399.1 225 88.4
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.7e-105 384.0 223 89.7
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.5e-100 369.8 225 81.8
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.7e-99 366.3 225 79.6
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.4e-98 362.5 224 79.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.4e-98 362.5 225 81.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.7e-96 356.3 225 77.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.3e-96 355.9 225 76.0
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 8.6e-96 354.0 221 78.7
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 7.3e-95 350.9 225 76.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 9.5e-95 350.5 225 75.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.2e-94 350.1 225 76.4
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.2e-94 350.1 225 76.4
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 2.8e-94 349.0 226 77.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 3.6e-94 348.6 223 77.6
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.6e-94 348.6 224 78.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 8.0e-94 347.4 225 76.9
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 8.0e-94 347.4 224 74.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.8e-93 346.3 225 74.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.3e-93 345.9 225 74.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.0e-93 345.1 250 70.4
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 6.8e-93 344.4 225 78.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 6.8e-93 344.4 221 74.2
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.2e-92 343.6 225 74.7
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.2e-92 343.6 225 74.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 9.8e-92 340.5 224 73.2
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.2e-91 339.3 218 75.2
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.2e-91 339.3 218 75.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.9e-91 339.0 224 73.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 4.9e-91 338.2 225 74.2
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 8.3e-91 337.4 226 73.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.4e-90 336.7 225 72.4
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.9e-90 336.3 223 73.5
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.4e-90 335.9 267 66.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 4.1e-90 335.1 225 72.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.1e-90 335.1 218 72.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 5.4e-90 334.7 225 73.3
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 9.2e-90 334.0 223 73.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.6e-89 333.2 223 72.6
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-89 333.2 223 72.2
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.0e-89 332.8 225 68.4
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.0e-89 332.8 262 64.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.0e-89 332.8 262 64.5
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 6.0e-89 331.3 218 72.5
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 7.8e-89 330.9 226 72.1
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.3e-88 330.1 225 68.9
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 6.6e-88 327.8 218 71.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.1e-87 327.0 220 68.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.3e-87 325.1 239 68.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.2e-86 321.2 225 71.1
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.8e-85 319.7 220 70.5
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.8e-85 319.7 254 64.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.2e-85 318.2 220 70.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 8.9e-85 317.4 225 70.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.2e-84 317.0 220 68.2
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.2e-84 317.0 217 70.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.5e-84 316.6 220 69.1
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.4e-84 315.5 220 69.1
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.3e-83 313.5 220 69.1
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.9e-83 312.4 225 68.0
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.9e-82 309.7 224 69.2
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.1e-81 306.2 220 66.4
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.1e-81 306.2 210 68.6
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.5e-81 305.4 218 66.5
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.0e-81 304.7 217 67.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.0e-81 304.7 215 70.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.0e-80 303.9 217 66.8
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.0e-80 303.9 217 66.8
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-80 302.8 217 68.7
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.9e-80 302.0 217 66.4
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.5e-79 299.3 220 64.1
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.5e-79 299.3 245 64.1
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 4.3e-79 298.5 219 65.8
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 4.3e-79 298.5 217 65.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 5.6e-79 298.1 219 65.3
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.7e-78 295.0 220 63.2
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.1e-77 293.9 217 64.5
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 5.2e-77 291.6 217 64.1
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.5e-76 290.0 218 62.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 7.6e-76 287.7 217 63.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 9.9e-76 287.3 217 62.2
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 9.9e-76 287.3 220 62.3
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.9e-75 285.8 217 63.1
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.9e-75 285.8 217 63.1
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.9e-75 285.8 217 63.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 4.9e-75 285.0 219 61.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 6.4e-75 284.6 220 61.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.4e-75 284.3 197 70.6
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.4e-74 283.5 218 62.4
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.9e-74 283.1 182 75.8
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 3.2e-74 282.3 225 60.9
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.2e-74 282.3 225 62.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-73 280.4 220 60.5
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.5e-73 278.9 218 59.2
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.0e-72 277.3 217 60.8
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.0e-72 277.3 213 62.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.7e-72 276.6 218 58.7
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 6.6e-72 274.6 176 77.3
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-71 273.9 215 65.1
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.7e-70 268.5 220 60.5
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-69 266.9 170 77.1
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-68 263.5 143 93.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.0e-68 263.1 165 75.8
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-67 260.0 185 68.6
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.9e-67 259.2 167 76.0
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.9e-67 259.2 167 76.0
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.9e-67 258.5 209 66.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.9e-67 258.5 221 61.1
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.4e-66 256.9 221 53.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.2e-66 255.8 214 55.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-65 253.8 167 74.3
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-64 249.6 213 61.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.1e-64 248.4 169 69.8
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.6e-64 248.1 175 67.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.5e-63 246.9 220 56.8
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.8e-62 242.7 143 81.1
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-61 240.0 165 72.1
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.0e-61 238.8 127 93.7
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 6.9e-61 238.0 164 72.6
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 9.0e-61 237.7 221 48.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.0e-60 236.5 189 62.4
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.6e-60 236.1 151 76.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 5.4e-58 228.4 144 77.1
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.3e-58 227.6 168 67.9
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.0e-57 224.9 218 55.0
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.7e-56 223.4 219 47.5
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.8e-54 216.1 215 45.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 6.9e-53 211.5 145 73.8
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.8e-51 205.7 131 74.8
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.9e-48 195.7 143 67.1
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-48 195.3 133 73.7
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.5e-47 193.0 199 46.7
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.3e-47 192.6 209 43.1
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 4.3e-47 192.2 123 75.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 5.6e-47 191.8 213 44.6
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-44 183.3 135 66.7
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-43 180.6 216 40.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.2e-43 179.9 218 37.2
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-41 174.1 117 70.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.3e-39 165.6 166 52.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.6e-38 163.7 128 66.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-36 157.5 101 75.2
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-30 134.8 91 72.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-27 127.5 81 72.8
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.7e-27 127.1 81 77.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.2e-22 110.2 138 47.8
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.7e-20 101.7 143 42.7
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-19 99.4 106 52.8
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.9e-18 97.1 83 60.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 6.1e-17 92.0 48 81.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 3.1e-13 79.7 46 73.9
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.2e-12 77.8 163 29.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.0e-12 77.0 66 59.1
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 5.9e-12 75.5 110 43.6
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.0e-08 64.7 55 56.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.0e-08 64.7 55 56.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.8e-08 63.9 54 57.4
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.8e-08 61.6 49 59.2


User provided reference genes

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