Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.8e-134 481.5 241 100.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.1e-128 461.5 241 96.3
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.5e-117 426.4 241 88.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 7.2e-117 424.1 231 90.5
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 9.4e-117 423.7 241 87.6
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 6.1e-116 421.0 244 87.3
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 5.7e-106 387.9 241 78.4
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 5.7e-106 387.9 232 81.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.2e-105 386.0 234 81.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.4e-105 384.4 235 77.4
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 5.4e-104 381.3 241 76.8
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 7.0e-104 380.9 239 76.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 75.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 3.5e-103 378.6 241 75.5
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.5e-103 378.6 241 81.7
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 76.3
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.7e-102 376.3 234 79.1
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.3e-102 375.9 234 79.1
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.0e-102 375.6 239 75.7
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.9e-102 375.2 229 79.0
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 3.9e-102 375.2 229 78.2
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 6.6e-102 374.4 241 74.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 6.6e-102 374.4 239 76.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.5e-101 373.2 241 75.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.9e-101 372.9 241 75.5
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.9e-101 372.9 241 75.5
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.3e-101 372.1 241 74.3
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 5.6e-101 371.3 241 76.3
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 7.3e-101 370.9 241 74.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 9.5e-101 370.5 241 75.1
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.6e-100 369.8 241 75.1
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.6e-100 369.8 241 74.3
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.8e-100 369.0 241 75.1
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 3.6e-100 368.6 241 74.3
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.7e-100 368.2 239 74.5
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 8.0e-100 367.5 241 74.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.4e-99 366.7 239 73.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.8e-99 366.3 241 74.3
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 3.1e-99 365.5 239 71.5
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 4.0e-99 365.2 241 74.7
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.0e-99 365.2 241 73.0
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 4.0e-99 365.2 241 73.0
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 6.8e-99 364.4 230 76.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 6.8e-99 364.4 241 72.6
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.2e-98 363.6 241 73.9
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.2e-98 363.6 241 72.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 2.0e-98 362.8 229 76.9
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 4.4e-98 361.7 232 75.4
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.8e-98 361.3 235 74.5
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.8e-98 361.3 231 74.0
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.5e-98 360.9 222 79.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 7.5e-98 360.9 242 72.3
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.3e-97 360.1 239 73.6
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.7e-97 359.8 230 73.5
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.9e-97 359.0 235 73.6
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 3.7e-97 358.6 231 75.3
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 3.7e-97 358.6 260 68.1
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 4.9e-97 358.2 239 72.8
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 4.9e-97 358.2 241 71.8
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.4e-97 357.8 231 73.2
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.1e-96 357.1 232 73.3
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.9e-96 356.3 236 72.0
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.1e-96 355.1 239 72.4
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.0e-96 354.4 231 72.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-95 353.6 241 71.4
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.6e-95 353.2 231 73.2
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.0e-95 352.8 241 72.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.7e-95 352.4 228 73.7
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.6e-95 351.7 211 80.6
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 7.8e-95 350.9 249 68.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.0e-94 350.5 241 71.0
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.0e-94 350.5 265 67.9
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.3e-94 350.1 240 69.2
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.0e-94 349.0 232 74.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.0e-94 349.0 240 69.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.0e-94 349.0 240 71.2
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.0e-94 349.0 240 71.2
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.5e-93 345.9 240 69.6
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 4.3e-93 345.1 235 72.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.6e-93 344.7 241 70.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 9.5e-93 344.0 282 62.8
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.2e-92 343.6 224 73.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 3.6e-92 342.0 213 79.3
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.1e-91 340.5 240 69.6
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.1e-91 340.5 240 69.6
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.1e-91 340.5 240 69.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.3e-91 339.3 236 70.8
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 4.0e-91 338.6 339 53.4
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.5e-90 336.7 266 64.3
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.0e-90 336.3 240 69.6
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.4e-90 335.5 240 68.8
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.3e-89 333.6 231 70.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.2e-89 332.8 202 78.7
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 2.9e-89 332.4 199 80.9
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.9e-89 331.6 240 65.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.4e-89 331.3 240 65.0
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 6.4e-89 331.3 212 74.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.4e-89 331.3 286 58.7
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 4.1e-88 328.6 240 67.9
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.5e-87 325.5 202 77.7
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.3e-85 318.9 240 66.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 9.5e-85 317.4 240 62.9
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.6e-84 316.6 206 74.3
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 7.6e-82 307.8 214 69.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.0e-78 297.4 240 65.0
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 2.1e-76 289.7 191 72.8
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.3e-73 280.4 176 74.4
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.2e-73 279.6 232 57.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.8e-73 278.9 231 61.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 9.3e-72 274.2 229 59.0
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.7e-70 270.0 171 73.7
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.7e-65 253.4 221 53.8
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.5e-63 245.7 167 70.1
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.3e-61 238.8 150 77.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.2e-57 226.5 145 72.4
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.6e-55 218.8 142 76.8
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.6e-55 218.8 142 76.8
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.0e-54 217.6 229 48.0
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.5e-53 213.8 191 55.5
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 3.7e-52 209.1 135 71.9
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.2e-50 204.1 182 58.8
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.2e-49 199.9 131 74.8
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.8e-49 199.1 127 79.5
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 2.1e-47 193.4 125 70.4
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.3e-46 190.7 164 60.4
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-45 187.6 119 78.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-45 186.4 119 77.3
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.3e-45 186.0 121 73.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.4e-43 180.6 120 73.3
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 6.9e-43 178.3 132 71.2
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 6.5e-41 171.8 235 43.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.8e-36 155.6 129 65.1
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 5.0e-33 145.6 121 62.8
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.2e-32 141.7 101 73.3
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.8e-30 137.1 159 47.2
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.0e-30 136.3 85 76.5
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.7e-30 135.2 111 64.0
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 2.8e-28 129.8 81 76.5
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.0e-26 123.6 86 68.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 4.5e-26 122.5 91 65.9
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 5.9e-26 122.1 237 35.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.5e-24 115.5 149 37.6
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.7e-23 113.2 100 65.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.8e-22 110.5 106 54.7
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.8e-20 102.4 72 68.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 2.0e-18 97.1 153 32.7
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.2e-17 93.6 51 82.4
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.2e-16 89.4 54 75.9
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.7e-15 86.7 54 72.2
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 2.2e-12 77.0 162 36.4
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 5.5e-08 62.4 34 82.4
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.4e-06 57.8 33 72.7
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 2.3e-06 57.0 30 83.3


User provided reference genes

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