Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.O00794 Erythranthe guttata HOM05D001023 ORTHO05D021472 6.3e-98 360.9 203 100.0
MSTRG.8614 Avicennia marina HOM05D001023 ORTHO05D000912 1.7e-13 80.5 62 67.7
Oeu024195.1 Olea europaea HOM05D001023 ORTHO05D000912 2.8e-13 79.7 72 61.1
SGA_v2.0_scaffold18G08459 Striga asiatica HOM05D001023 ORTHO05D000912 2.8e-13 79.7 60 71.7
MSTRG.34 Avicennia marina HOM05D001023 ORTHO05D000912 6.3e-13 78.6 62 69.4
Migut.C00089 Erythranthe guttata HOM05D001023 ORTHO05D021472 6.3e-13 78.6 78 61.5
SGA_v2.0_scaffold44G16844 Striga asiatica HOM05D001023 ORTHO05D000912 1.4e-12 77.4 62 69.4
Migut.F00994 Erythranthe guttata HOM05D001023 ORTHO05D000912 1.8e-12 77.0 62 64.5
SalBow2G0210 Salvia bowleyana HOM05D001023 ORTHO05D000912 4.1e-12 75.9 78 57.7
Oeu023683.1 Olea europaea HOM05D001023 ORTHO05D000912 5.3e-12 75.5 62 66.1
Oeu039803.1 Olea europaea HOM05D001023 ORTHO05D000912 2.6e-11 73.2 62 66.1
unitig_92.g28242 Utricularia gibba HOM05D001023 ORTHO05D000912 2.6e-11 73.2 62 64.5
Cc02_g00890 Coffea canephora HOM05D001023 ORTHO05D000912 5.9e-11 72.0 62 66.1
Oeu037973.2 Olea europaea HOM05D001023 ORTHO05D000912 1.3e-10 70.9 62 62.9
Oeu055382.2 Olea europaea HOM05D001023 ORTHO05D000912 1.1e-09 67.8 62 59.7
Solyc03g082390.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 1.1e-09 67.8 88 45.5
Sopen03g022120 Solanum pennellii HOM05D001023 ORTHO05D000912 1.1e-09 67.8 88 45.5
PGSC0003DMG401003209 Solanum tuberosum HOM05D001023 ORTHO05D000912 1.4e-09 67.4 88 44.3
Solyc03g082400.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 2.5e-09 66.6 83 48.2
Sopen03g022130 Solanum pennellii HOM05D001023 ORTHO05D000912 2.5e-09 66.6 83 48.2
Dinv35377 Davidia involucrata HOM05D001023 ORTHO05D000912 3.2e-09 66.2 59 61.0
Peaxi162Scf00300g00849 Petunia axillaris HOM05D001023 ORTHO05D000912 3.2e-09 66.2 87 46.0
Hma1.2p1_0094F.1_g047300 Hydrangea macrophylla HOM05D001023 ORTHO05D000912 4.2e-09 65.9 42 76.2
CSS0000207 Camellia sinensis var. sinensis HOM05D001023 ORTHO05D000912 5.5e-09 65.5 42 73.8
CSS0001777 Camellia sinensis var. sinensis HOM05D001023 ORTHO05D000912 5.5e-09 65.5 42 73.8
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 5.5e-09 65.5 46 69.6
SalBow6G2901 Salvia bowleyana HOM05D001023 ORTHO05D000912 5.5e-09 65.5 42 71.4
Migut.F00157 Erythranthe guttata HOM05D001023 ORTHO05D000912 7.2e-09 65.1 62 53.2
Actinidia08691 Actinidia chinensis HOM05D001023 ORTHO05D000912 1.6e-08 63.9 37 81.1
Actinidia34262 Actinidia chinensis HOM05D001023 ORTHO05D000912 1.6e-08 63.9 40 75.0
CSS0014804 Camellia sinensis var. sinensis HOM05D001023 ORTHO05D000912 1.6e-08 63.9 32 90.6
Cfa016170 Carpinus fangiana HOM05D001023 ORTHO05D000912 2.1e-08 63.5 79 49.4
Lj3A897T89 Lonicera japonica HOM05D001023 ORTHO05D000912 2.1e-08 63.5 44 72.7
Medtr3g092550 Medicago truncatula HOM05D001023 ORTHO05D000912 2.1e-08 63.5 49 63.3
PGSC0003DMG400030226 Solanum tuberosum HOM05D001023 ORTHO05D000912 2.1e-08 63.5 32 93.8
PGSC0003DMG402003209 Solanum tuberosum HOM05D001023 ORTHO05D000912 2.1e-08 63.5 83 47.0
A09p28620 Brassica napus HOM05D001023 ORTHO05D000912 3.6e-08 62.8 91 39.6
BraA09t38423Z Brassica rapa HOM05D001023 ORTHO05D000912 3.6e-08 62.8 91 39.6
Haze_00284 Corylus avellana HOM05D001023 ORTHO05D000912 3.6e-08 62.8 79 49.4
Aa31LG9G11390 Aethionema arabicum HOM05D001023 ORTHO05D000912 4.7e-08 62.4 77 45.5
Ca_16770_v3 Cicer arietinum L. HOM05D001023 ORTHO05D000912 4.7e-08 62.4 37 78.4
Nn3g18863 Nelumbo nucifera HOM05D001023 ORTHO05D000912 4.7e-08 62.4 40 70.0
AUR62006013 Chenopodium quinoa HOM05D001023 ORTHO05D000912 6.1e-08 62.0 84 45.2
DCAR_020366 Daucus carota HOM05D001023 ORTHO05D000912 6.1e-08 62.0 83 42.2
Medtr3g092510 Medicago truncatula HOM05D001023 ORTHO05D000912 6.1e-08 62.0 49 61.2
Peaxi162Scf00618g00017 Petunia axillaris HOM05D001023 ORTHO05D000912 6.1e-08 62.0 83 49.4
Psat5g072680 Pisum sativum HOM05D001023 ORTHO05D000912 7.9e-08 61.6 33 84.8
AT4G10610 Arabidopsis thaliana HOM05D001023 ORTHO05D000912 1.0e-07 61.2 49 55.1
ClCG07G017440 Citrullus lanatus HOM05D001023 ORTHO05D000912 1.0e-07 61.2 78 52.6
Glyma.06G135300 Glycine max HOM05D001023 ORTHO05D000912 1.0e-07 61.2 45 66.7
Solyc06g053300.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 1.0e-07 61.2 87 48.3
Sopen06g018360 Solanum pennellii HOM05D001023 ORTHO05D000912 1.0e-07 61.2 87 48.3
TAR374G0691 Trochodendron aralioides HOM05D001023 ORTHO05D000912 1.0e-07 61.2 62 51.6
Lalb_Chr11g0067341 Lupinus albus HOM05D001023 ORTHO05D000912 1.4e-07 60.8 37 75.7
Nitab4.5_0000319g0140 Nicotiana tabacum HOM05D001023 ORTHO05D000912 1.4e-07 60.8 83 45.8
Nitab4.5_0006389g0030 Nicotiana tabacum HOM05D001023 ORTHO05D000912 1.4e-07 60.8 83 47.0
CAN.G1930.3 Capsicum annuum HOM05D001023 ORTHO05D000912 1.8e-07 60.5 62 53.2
Ca_16768_v3 Cicer arietinum L. HOM05D001023 ORTHO05D000912 1.8e-07 60.5 32 84.4
DCAR_008978 Daucus carota HOM05D001023 ORTHO05D000912 1.8e-07 60.5 30 90.0
Glyma.04G229400 Glycine max HOM05D001023 ORTHO05D000912 1.8e-07 60.5 32 84.4
Lsat_1_v5_gn_2_60681 Lactuca sativa HOM05D001023 ORTHO05D000912 1.8e-07 60.5 62 54.8
Lj1C1027G15 Lonicera japonica HOM05D001023 ORTHO05D000912 1.8e-07 60.5 31 87.1
Lj3C897G5 Lonicera japonica HOM05D001023 ORTHO05D000912 1.8e-07 60.5 45 68.9
Sc25g0001040 Simmondsia chinensis HOM05D001023 ORTHO05D000912 2.3e-07 60.1 76 48.7
TPR.G28970 Trifolium pratense HOM05D001023 ORTHO05D000912 2.3e-07 60.1 31 87.1
Actinidia28279 Actinidia chinensis HOM05D001023 ORTHO05D000912 3.0e-07 59.7 62 53.2
MSTRG.13702 Avicennia marina HOM05D001023 ORTHO05D000912 3.0e-07 59.7 33 81.8
CARHR032170 Cardamine hirsuta HOM05D001023 ORTHO05D000912 3.0e-07 59.7 48 56.2
CiPaw.06G041700 Carya illinoinensis HOM05D001023 ORTHO05D000912 3.0e-07 59.7 81 46.9
CiPaw.06G041900 Carya illinoinensis HOM05D001023 ORTHO05D000912 3.0e-07 59.7 81 45.7
HanXRQChr05g0139321 Helianthus annuus HOM05D001023 ORTHO05D000912 3.0e-07 59.7 49 57.1
Actinidia18678 Actinidia chinensis HOM05D001023 ORTHO05D000912 3.9e-07 59.3 62 53.2
BcaC05g27310 Brassica carinata HOM05D001023 ORTHO05D000912 3.9e-07 59.3 76 44.7
BolC5t31963H Brassica oleracea HOM05D001023 ORTHO05D000912 3.9e-07 59.3 76 44.7
DCAR_014561 Daucus carota HOM05D001023 ORTHO05D000912 3.9e-07 59.3 52 57.7
HanXRQChr13g0418511 Helianthus annuus HOM05D001023 ORTHO05D000912 3.9e-07 59.3 38 68.4
Lsat_1_v5_gn_3_110901 Lactuca sativa HOM05D001023 ORTHO05D000912 3.9e-07 59.3 76 48.7
Sc19g0000630 Simmondsia chinensis HOM05D001023 ORTHO05D000912 3.9e-07 59.3 86 41.9
Zm00001eb173820 Zea mays HOM05D001023 ORTHO05D000912 3.9e-07 59.3 56 51.8
Glyma.04G229500 Glycine max HOM05D001023 ORTHO05D000912 5.1e-07 58.9 31 83.9
Lalb_Chr23g0271881 Lupinus albus HOM05D001023 ORTHO05D000912 5.1e-07 58.9 31 83.9
Phvul.009G046100 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 5.1e-07 58.9 31 83.9
Sed0010724 Sechium edule HOM05D001023 ORTHO05D000912 5.1e-07 58.9 31 83.9
TAR636G0272 Trochodendron aralioides HOM05D001023 ORTHO05D000912 5.1e-07 58.9 39 69.2
unitig_0.g2629 Utricularia gibba HOM05D001023 ORTHO05D001820 5.1e-07 58.9 61 57.4
A09p33520 Brassica napus HOM05D001023 ORTHO05D000912 6.7e-07 58.5 78 42.3
CAN.G303.10 Capsicum annuum HOM05D001023 ORTHO05D000912 6.7e-07 58.5 73 43.8
CAN.G303.9 Capsicum annuum HOM05D001023 ORTHO05D000912 6.7e-07 58.5 79 41.8
MELO3C024854.2 Cucumis melo HOM05D001023 ORTHO05D000912 6.7e-07 58.5 32 81.2
CsaV3_4G008520 Cucumis sativus L. HOM05D001023 ORTHO05D000912 6.7e-07 58.5 32 81.2
AL6G44680 Arabidopsis lyrata HOM05D001023 ORTHO05D000912 8.8e-07 58.2 48 56.2
arahy.Tifrunner.gnm1.ann1.863Y68 Arachis hypogaea HOM05D001023 ORTHO05D000912 8.8e-07 58.2 31 83.9
arahy.Tifrunner.gnm1.ann1.LLV436 Arachis hypogaea HOM05D001023 ORTHO05D000912 8.8e-07 58.2 31 83.9
BcaB01g01491 Brassica carinata HOM05D001023 ORTHO05D000912 8.8e-07 58.2 89 39.3
BraA09t38893Z Brassica rapa HOM05D001023 ORTHO05D000912 8.8e-07 58.2 78 42.3
HanXRQChr14g0439811 Helianthus annuus HOM05D001023 ORTHO05D000912 8.8e-07 58.2 65 53.8
AL1G47100 Arabidopsis lyrata HOM05D001023 ORTHO05D000912 1.1e-06 57.8 41 63.4
HanXRQChr12g0382101 Helianthus annuus HOM05D001023 ORTHO05D000912 1.1e-06 57.8 60 51.7
PSO478G3532 Papaver somniferum HOM05D001023 ORTHO05D000912 1.1e-06 57.8 41 68.3
PSO782G4539 Papaver somniferum HOM05D001023 ORTHO05D000912 1.1e-06 57.8 41 68.3
Psat5g072840 Pisum sativum HOM05D001023 ORTHO05D000912 1.1e-06 57.8 30 86.7
Sp1g28170 Schrenkiella parvula HOM05D001023 ORTHO05D000912 1.1e-06 57.8 49 57.1
Sp6g06840 Schrenkiella parvula HOM05D001023 ORTHO05D000912 1.1e-06 57.8 83 45.8
Sc13g0010220 Simmondsia chinensis HOM05D001023 ORTHO05D000912 1.1e-06 57.8 76 44.7
vmacro06432 Vaccinium macrocarpon HOM05D001023 ORTHO05D000912 1.1e-06 57.8 32 87.5
MSTRG.2031 Avicennia marina HOM05D001023 ORTHO05D000912 1.5e-06 57.4 32 81.2
EL10Ac3g05190 Beta vulgaris HOM05D001023 ORTHO05D000912 1.5e-06 57.4 87 40.2
Carub.0001s3112 Capsella rubella HOM05D001023 ORTHO05D000912 1.5e-06 57.4 48 54.2
PSO063G3832 Papaver somniferum HOM05D001023 ORTHO05D000912 1.5e-06 57.4 37 73.0
BcaB01g02744 Brassica carinata HOM05D001023 ORTHO05D000912 2.0e-06 57.0 79 44.3
Carub.0006s2941 Capsella rubella HOM05D001023 ORTHO05D000912 2.0e-06 57.0 48 56.2
Glyma.06G135200 Glycine max HOM05D001023 ORTHO05D000912 2.0e-06 57.0 31 80.6
Lalb_Chr11g0067351 Lupinus albus HOM05D001023 ORTHO05D000912 2.0e-06 57.0 31 80.6
Nitab4.5_0000319g0200 Nicotiana tabacum HOM05D001023 ORTHO05D000912 2.0e-06 57.0 77 50.6
Prupe.2G318100 Prunus persica HOM05D001023 ORTHO05D000912 2.0e-06 57.0 31 80.6
Sed0026199 Sechium edule HOM05D001023 ORTHO05D000912 2.0e-06 57.0 32 75.0
BcaB02g09588 Brassica carinata HOM05D001023 ORTHO05D000912 2.6e-06 56.6 78 44.9
C05p32310 Brassica napus HOM05D001023 ORTHO05D000912 2.6e-06 56.6 76 43.4
Duzib068G1119 Durio zibethinus HOM05D001023 ORTHO05D000912 2.6e-06 56.6 74 40.5
Nitab4.5_0002895g0030 Nicotiana tabacum HOM05D001023 ORTHO05D000912 2.6e-06 56.6 82 46.3
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 2.6e-06 56.6 31 77.4
TAR629G3089 Trochodendron aralioides HOM05D001023 ORTHO05D000912 2.6e-06 56.6 29 86.2
unitig_748.g7279 Utricularia gibba HOM05D001023 ORTHO05D000912 2.6e-06 56.6 61 52.5
AT1G32790 Arabidopsis thaliana HOM05D001023 ORTHO05D000912 3.3e-06 56.2 48 56.2
Hund21052 Selenicereus undatus HOM05D001023 ORTHO05D000912 3.3e-06 56.2 29 86.2
DCAR_010576 Daucus carota HOM05D001023 ORTHO05D000912 4.4e-06 55.8 62 54.8
ECA240G3572 Erigeron canadensis HOM05D001023 ORTHO05D000912 4.4e-06 55.8 58 53.4
Thhalv10008028m.g Eutrema salsugineum HOM05D001023 ORTHO05D000912 4.4e-06 55.8 39 64.1
Lsat_1_v5_gn_5_67100 Lactuca sativa HOM05D001023 ORTHO05D000912 4.4e-06 55.8 59 52.5
Lsat_1_v5_gn_9_50120 Lactuca sativa HOM05D001023 ORTHO05D000912 4.4e-06 55.8 82 43.9
PSO782G2033 Papaver somniferum HOM05D001023 ORTHO05D000912 4.4e-06 55.8 37 70.3
THA.LOC104813062 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 4.4e-06 55.8 31 77.4
THA.LOC104815340 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 4.4e-06 55.8 31 77.4
A03p29040 Brassica napus HOM05D001023 ORTHO05D000912 5.7e-06 55.5 82 45.1
VMungo1309G0468 Vigna mungo HOM05D001023 ORTHO05D017671 5.7e-06 55.5 31 80.6
Atru.chr9.1858 Acer truncatum HOM05D001023 ORTHO05D000912 7.4e-06 55.1 43 58.1
Aa31LG6G7460 Aethionema arabicum HOM05D001023 ORTHO05D000912 7.4e-06 55.1 86 41.9
Carub.0005s1568 Capsella rubella HOM05D001023 ORTHO05D000912 7.4e-06 55.1 85 42.4
CDE09G0750 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 7.4e-06 55.1 36 72.2
MD01G1227700 Malus domestica HOM05D001023 ORTHO05D000912 7.4e-06 55.1 31 77.4
Nitab4.5_0000115g0070 Nicotiana tabacum HOM05D001023 ORTHO05D000912 7.4e-06 55.1 53 58.5
arahy.Tifrunner.gnm1.ann1.03VLQB Arachis hypogaea HOM05D001023 ORTHO05D021472 9.7e-06 54.7 31 77.4
arahy.Tifrunner.gnm1.ann1.H0DRPA Arachis hypogaea HOM05D001023 ORTHO05D021472 9.7e-06 54.7 31 77.4
Haze_09195 Corylus avellana HOM05D001023 ORTHO05D000912 9.7e-06 54.7 74 41.9
HanXRQChr03g0090151 Helianthus annuus HOM05D001023 ORTHO05D000912 9.7e-06 54.7 29 82.8
Lalb_Chr23g0271891 Lupinus albus HOM05D001023 ORTHO05D000912 9.7e-06 54.7 31 77.4


User provided reference genes

Program Settings