Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 0.0e+00 1346.6 692 100.0
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.4e-290 1001.9 691 74.1
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 4.4e-276 954.5 755 67.7
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 4.2e-250 868.2 697 64.4
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 3.8e-243 845.1 700 61.4
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.2e-241 840.1 702 62.4
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 3.0e-240 835.5 697 62.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.1e-239 833.6 704 61.9
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.5e-236 823.2 705 61.0
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 4.5e-236 821.6 695 61.3
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.3e-235 820.1 685 62.0
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 4.9e-235 818.1 734 59.4
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 5.5e-234 814.7 702 61.4
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 4.6e-233 811.6 704 59.2
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 2.1e-230 802.7 703 60.0
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 9.0e-229 797.3 704 58.9
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.7e-227 793.1 690 60.3
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.2e-227 792.7 694 59.7
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.9e-227 792.3 710 57.9
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.9e-226 789.6 696 59.8
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 3.2e-226 788.9 695 60.4
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.1e-225 786.2 695 59.4
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.3e-224 783.5 697 59.7
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 1.8e-224 783.1 717 57.5
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 2.5e-223 779.2 737 55.6
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 7.4e-223 777.7 689 60.4
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.1e-221 773.9 701 58.3
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.0e-220 769.6 699 59.9
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.6e-220 769.2 697 58.4
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 4.5e-220 768.5 692 57.5
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.1e-218 763.8 704 58.4
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.9e-218 763.1 692 57.2
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.5e-218 761.5 695 58.6
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.5e-218 761.5 705 58.2
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.6e-217 760.0 704 57.5
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 2.1e-217 759.6 694 56.2
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.7e-217 759.2 699 57.5
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.6e-217 758.8 714 56.9
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.3e-215 752.3 722 56.5
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 8.2e-214 747.7 703 56.6
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.5e-210 736.1 700 55.4
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.6e-209 733.4 750 53.3
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.6e-209 733.4 694 56.2
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 7.0e-205 718.0 720 55.3
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 3.5e-204 715.7 843 50.9
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 8.5e-203 711.1 697 54.9
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.8e-200 703.4 697 53.9
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.1e-199 700.7 697 53.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 2.6e-199 699.5 681 55.8
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.6e-199 699.5 696 54.0
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 4.4e-199 698.7 706 54.4
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 9.7e-199 697.6 697 53.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.8e-197 693.3 701 54.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 4.1e-197 692.2 625 57.8
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.2e-196 690.6 697 53.8
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.6e-196 690.3 661 55.1
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 3.5e-196 689.1 699 54.1
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 2.1e-193 679.9 698 53.2
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 2.7e-193 679.5 644 56.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 6.1e-193 678.3 710 51.8
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 6.1e-193 678.3 697 53.2
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.0e-192 677.6 697 52.9
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.4e-189 667.2 697 52.5
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.4e-189 667.2 697 52.5
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.4e-189 667.2 697 52.5
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.3e-187 660.6 694 52.0
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 2.9e-187 659.4 613 57.3
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.9e-186 656.8 695 51.7
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 8.8e-184 647.9 690 50.7
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.0e-179 632.1 605 56.2
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.5e-178 629.8 695 48.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.6e-177 627.1 701 50.8
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.6e-172 610.5 694 51.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 3.9e-171 605.9 699 49.9
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 4.7e-169 599.0 627 51.8
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 4.9e-166 589.0 698 47.3
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.4e-165 587.4 624 53.0
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.4e-165 587.4 697 49.2
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 6.6e-163 578.6 691 48.0
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 8.6e-163 578.2 552 55.8
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.5e-162 577.4 693 47.6
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 6.8e-160 568.5 695 48.2
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.3e-158 564.3 697 48.4
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 4.0e-152 542.7 703 44.1
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.5e-151 540.8 694 45.5
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.0e-151 540.4 676 44.2
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 4.4e-151 539.3 700 45.3
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.1e-149 534.6 791 44.0
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.6e-148 530.8 694 43.2
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 4.6e-148 529.3 524 52.9
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.1e-147 525.8 547 51.7
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 4.3e-146 522.7 516 53.7
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 9.6e-146 521.5 605 49.6
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.1e-136 491.5 620 47.1
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.3e-123 448.0 697 39.9
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.5e-117 427.2 682 41.8
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 4.6e-116 422.9 484 49.0
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.0e-115 421.8 706 37.7
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 4.3e-114 416.4 704 36.9
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.0e-110 405.2 565 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 3.2e-109 400.2 700 36.1
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 6.3e-97 359.4 484 42.8
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 6.9e-96 355.9 577 41.2
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.8e-88 331.3 222 73.0
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.8e-88 331.3 226 69.9
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.8e-86 323.6 462 42.4
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 8.0e-84 315.8 542 39.1
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.6e-82 310.8 911 27.1
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 5.3e-80 303.1 273 58.2
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.9e-79 299.7 278 57.2
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 2.2e-73 281.2 427 41.5
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.0e-67 262.3 169 75.1
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 6.8e-67 259.6 332 47.9
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 2.3e-62 244.6 162 74.7
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.2e-59 233.4 170 69.4
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.4e-56 225.3 146 76.0
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.7e-54 218.4 183 60.7
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 9.5e-53 212.6 166 66.9
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.1e-51 209.1 135 77.0
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.5e-47 194.1 387 34.1
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.5e-47 194.1 174 56.3
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-45 188.3 178 57.3
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.3e-45 187.6 148 65.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 9.5e-45 186.0 272 41.2
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.2e-39 169.1 145 60.7
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.6e-39 168.7 139 60.4
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.5e-39 167.5 146 60.3
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 9.5e-37 159.5 121 60.3
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.6e-36 158.7 102 72.5
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 2.0e-34 151.8 687 24.9
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 5.4e-32 143.7 142 54.9
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 3.0e-30 137.9 289 33.2
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.1e-29 136.0 163 47.2
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.1e-27 129.4 259 33.2
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.4e-24 118.2 91 67.0
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 9.3e-24 116.3 149 45.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.5e-21 109.0 101 56.4
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 2.4e-19 101.7 55 81.8
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 9.0e-19 99.8 307 29.3
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.2e-18 99.4 177 34.5
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.9e-17 94.7 55 70.9
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.9e-16 92.0 53 75.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.3e-12 79.3 77 50.6
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.8e-12 78.2 67 53.7
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 4.8e-12 77.4 179 32.4
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 8.4e-09 66.6 42 69.0
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 8.4e-09 66.6 42 69.0


User provided reference genes

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