Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 5.1e-210 734.9 643 100.0
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.9e-111 407.5 675 75.1
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 7.1e-111 405.6 648 75.9
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 3.3e-100 370.2 639 74.8
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 2.1e-99 367.5 647 73.9
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.6e-94 349.7 667 71.5
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 6.0e-94 349.4 667 70.6
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 1.3e-93 348.2 681 70.0
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 2.3e-93 347.4 664 70.9
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 3.0e-93 347.1 691 68.6
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 3.9e-93 346.7 676 70.1
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 1.1e-92 345.1 681 69.6
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.9e-92 344.4 676 69.8
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 9.6e-92 342.0 632 72.8
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 2.8e-91 340.5 596 76.5
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 6.3e-91 339.3 674 70.0
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.8e-90 337.8 716 53.4
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 3.1e-90 337.0 662 72.2
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.2e-89 335.1 647 71.9
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 7.6e-89 332.4 626 73.2
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.0e-88 332.0 542 81.2
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 5.0e-88 329.7 663 70.4
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 6.5e-88 329.3 649 71.5
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.4e-87 328.2 669 69.5
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 2.5e-87 327.4 643 71.1
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 5.5e-87 326.2 687 69.1
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 7.2e-87 325.9 648 71.1
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.6e-86 324.7 635 71.5
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 3.5e-86 323.6 649 71.0
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 3.5e-86 323.6 659 70.4
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 4.6e-86 323.2 653 70.3
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 1.0e-85 322.0 651 70.8
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 3.9e-85 320.1 652 69.6
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 5.1e-85 319.7 667 69.7
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 6.7e-85 319.3 626 72.5
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 8.7e-85 318.9 666 69.4
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.9e-84 317.8 651 69.9
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.5e-84 317.4 666 68.8
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 2.5e-84 317.4 654 69.7
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 9.7e-84 315.5 631 71.9
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 2.2e-83 314.3 647 70.6
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 4.8e-83 313.2 628 71.5
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 6.3e-83 312.8 644 70.2
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 8.2e-83 312.4 661 68.7
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 4.1e-82 310.1 699 65.8
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 5.3e-82 309.7 576 65.3
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 5.3e-82 309.7 558 75.6
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.5e-81 308.1 635 70.7
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 7.7e-81 305.8 697 66.3
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 1.3e-80 305.1 555 76.0
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 1.3e-80 305.1 555 76.0
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.3e-80 305.1 635 70.2
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 1.3e-80 305.1 711 44.4
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.7e-80 304.7 571 75.8
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 2.2e-80 304.3 643 70.0
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 2.9e-80 303.9 642 68.5
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 2.9e-80 303.9 630 70.6
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 3.8e-80 303.5 582 75.6
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 5.0e-80 303.1 554 76.5
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 5.0e-80 303.1 618 70.2
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 6.5e-80 302.8 641 70.0
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 6.5e-80 302.8 547 77.7
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 8.5e-80 302.4 624 70.4
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 8.5e-80 302.4 618 71.2
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 1.4e-79 301.6 626 70.3
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.9e-79 301.2 644 68.8
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 1.9e-79 301.2 648 67.3
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 5.5e-79 299.7 640 69.7
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 5.5e-79 299.7 630 70.5
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 5.5e-79 299.7 624 70.4
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 7.2e-79 299.3 641 68.6
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.2e-78 298.5 517 80.9
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.6e-78 298.1 621 71.0
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 2.1e-78 297.7 632 70.1
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.7e-78 297.4 606 71.0
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 3.6e-78 297.0 517 80.7
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 6.1e-78 296.2 638 69.0
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 1.4e-77 295.0 267 64.8
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 3.0e-77 293.9 646 68.6
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 5.1e-77 293.1 641 69.0
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 6.7e-77 292.7 533 77.5
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 2.0e-76 291.2 637 70.0
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 2.0e-76 291.2 547 77.1
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 4.3e-76 290.0 636 70.6
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 5.7e-76 289.7 538 76.6
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.0e-72 278.9 666 66.1
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.1e-71 275.4 543 40.1
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 1.2e-70 271.9 668 66.0
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 6.1e-70 269.6 559 73.9
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 6.7e-69 266.2 575 59.5
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 9.7e-68 262.3 527 74.6
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 4.2e-63 246.9 266 54.5
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 5.5e-63 246.5 228 62.3
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.0e-61 242.3 645 61.1
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 2.2e-59 234.6 696 57.8
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 5.9e-57 226.5 280 51.1
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.9e-55 221.5 638 61.9
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 4.2e-47 193.7 528 69.9
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 1.6e-46 191.8 144 62.5
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 5.7e-36 156.8 103 72.8
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 3.7e-35 154.1 169 68.0
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 7.0e-34 149.8 116 60.3
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.7e-32 145.2 185 52.4
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 2.5e-31 141.4 110 61.8
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 4.7e-30 137.1 110 59.1
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 5.2e-29 133.7 114 56.1
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.4e-28 131.0 201 45.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 9.8e-28 129.4 110 59.1
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.1e-26 125.9 80 77.5
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.2e-25 122.5 80 75.0
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.5e-25 120.9 88 68.2
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.9e-18 98.6 192 40.1
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 9.2e-18 96.3 123 52.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 2.7e-17 94.7 127 39.4
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 2.8e-14 84.7 117 40.2
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.2e-12 79.3 112 38.4
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.5e-12 79.0 73 90.4


User provided reference genes

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