Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.9e-123 445.3 231 100.0
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.6e-84 316.6 231 73.2
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 4.9e-78 295.0 210 75.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.1e-74 283.9 235 65.1
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.9e-74 283.1 234 67.5
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 7.3e-74 281.2 232 65.5
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 7.3e-74 281.2 235 64.3
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.6e-73 280.0 231 65.8
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.8e-73 279.3 233 64.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 4.7e-73 278.5 235 64.7
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 8.0e-73 277.7 235 64.3
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.8e-72 276.6 236 64.0
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.3e-72 276.2 233 64.8
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 5.2e-72 275.0 207 70.0
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 5.2e-72 275.0 231 64.9
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 6.8e-72 274.6 238 62.2
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.5e-71 273.5 231 62.8
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 4.4e-71 271.9 237 62.9
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.5e-71 271.2 235 64.3
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.5e-71 271.2 235 64.3
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.7e-70 270.0 234 64.5
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.9e-70 269.2 232 62.9
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.9e-70 269.2 238 60.9
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.9e-70 269.2 232 62.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.7e-70 268.9 233 62.7
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 4.9e-70 268.5 234 64.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.4e-69 266.9 232 62.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 2.4e-69 266.2 234 63.2
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.1e-69 265.4 234 62.4
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.1e-69 265.4 233 60.5
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 5.4e-69 265.0 232 63.4
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 7.0e-69 264.6 234 62.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.2e-68 263.8 231 61.9
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.6e-68 263.5 233 62.2
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.0e-68 263.1 236 61.4
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 2.7e-68 262.7 236 63.1
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 4.6e-68 261.9 231 59.7
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 4.6e-68 261.9 236 60.6
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.3e-67 260.4 232 60.3
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.7e-67 260.0 231 58.9
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-67 259.6 238 60.5
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 5.0e-67 258.5 240 60.4
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 6.6e-67 258.1 236 61.4
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.6e-67 258.1 234 62.0
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 6.6e-67 258.1 236 60.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 8.6e-67 257.7 227 63.0
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-66 257.3 231 59.7
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.1e-66 257.3 234 60.7
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.1e-66 257.3 233 60.1
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.5e-66 256.1 236 60.2
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 2.5e-66 256.1 272 55.9
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 3.3e-66 255.8 232 60.3
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 5.6e-66 255.0 231 58.4
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.2e-65 253.8 238 59.2
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.6e-65 253.4 238 59.2
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 2.8e-65 252.7 231 60.2
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 4.7e-65 251.9 234 62.0
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 4.7e-65 251.9 234 62.0
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 6.2e-65 251.5 231 60.2
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.0e-65 251.1 240 60.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.1e-64 250.8 238 57.6
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-64 249.6 238 58.4
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.1e-64 249.2 231 59.7
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.5e-63 246.9 232 58.2
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 2.0e-63 246.5 239 57.3
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.7e-62 243.4 237 55.7
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.9e-62 241.9 240 56.7
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.1e-61 240.7 239 55.6
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.4e-61 240.4 227 57.7
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 2.4e-61 239.6 240 54.2
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 2.4e-61 239.6 239 56.1
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.2e-61 239.2 208 62.5
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 3.2e-61 239.2 208 59.6
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.2e-61 239.2 200 65.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 5.4e-61 238.4 240 54.2
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 9.2e-61 237.7 206 61.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-60 236.9 233 55.8
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.1e-60 236.5 240 53.8
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.7e-60 236.1 207 59.9
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 6.0e-60 235.0 240 53.3
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 7.8e-60 234.6 233 55.8
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.0e-59 234.2 210 59.5
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.0e-59 232.6 240 52.9
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.9e-59 232.3 248 54.0
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.6e-58 228.4 195 62.1
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.6e-57 226.9 269 49.8
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.1e-57 226.5 142 73.9
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.8e-56 223.4 265 51.7
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 8.9e-56 221.1 187 61.0
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.2e-54 216.5 220 54.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 3.7e-54 215.7 213 56.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.4e-53 213.8 211 56.9
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.4e-53 213.0 234 54.7
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.3e-51 207.2 232 53.9
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.6e-51 204.5 225 53.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.5e-50 203.8 231 54.1
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 2.8e-49 199.5 122 77.0
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 3.6e-49 199.1 206 57.3
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 4.7e-49 198.7 235 51.1
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.7e-46 190.3 233 50.6
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.4e-46 188.3 238 50.0
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.1e-45 187.6 181 61.9
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.9e-45 186.8 231 46.8
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.5e-44 182.6 181 60.8
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 7.8e-44 181.4 140 62.9
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 7.3e-42 174.9 259 45.6
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 2.1e-41 173.3 234 45.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 4.7e-41 172.2 262 43.1
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.0e-39 166.8 176 56.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 3.8e-38 162.5 184 53.8
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 4.9e-38 162.2 196 47.4
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 4.9e-38 162.2 134 60.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.4e-38 161.8 223 45.3
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.4e-37 160.6 181 53.0
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.1e-36 156.8 217 44.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 5.1e-35 152.1 253 40.7
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.5e-31 140.6 199 45.2
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.0e-27 127.9 106 61.3
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 7.6e-23 111.7 70 77.1
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 9.3e-21 104.8 180 43.3
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.5e-20 102.8 180 37.8
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.3e-19 100.1 57 73.7
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 2.1e-17 93.6 67 56.7
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-16 91.3 61 72.1
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.8e-16 90.5 50 76.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.4e-15 86.3 69 58.0
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.5e-15 85.9 49 77.6
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.7e-14 84.0 58 72.4
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.5e-13 80.1 48 83.3
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.2e-13 79.7 48 83.3
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.1e-13 78.6 48 81.2
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 7.1e-13 78.6 48 79.2
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 6.7e-11 72.0 104 48.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.7e-11 71.6 43 79.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.9e-10 70.5 43 79.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-09 67.8 53 73.6
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.6e-07 60.1 42 66.7
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 3.8e-06 56.2 29 82.8


User provided reference genes

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