Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1852.8 954 100.0
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1588.9 958 86.3
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1571.6 957 85.3
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1511.9 980 81.7
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1452.6 954 79.5
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1451.0 954 79.4
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1445.3 972 78.8
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1442.9 957 79.1
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1441.4 941 80.3
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1430.2 947 79.2
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1429.8 922 80.8
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1428.3 955 79.2
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1414.8 848 85.0
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1401.0 1055 73.5
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1394.8 949 78.0
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1390.6 1034 74.1
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1388.6 944 76.3
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1388.6 931 77.9
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1388.2 935 77.3
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1384.8 942 77.2
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1377.8 927 76.9
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1376.3 958 75.7
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1375.9 938 76.5
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1375.9 944 76.8
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1375.5 941 76.1
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1374.4 904 77.7
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1374.0 953 76.1
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1373.6 926 77.2
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1373.2 931 76.4
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1372.5 933 78.3
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1370.5 943 76.6
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1370.1 949 75.0
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1369.0 946 76.6
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1367.8 935 75.7
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 932 76.1
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 925 76.3
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 911 78.0
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1366.7 938 76.5
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1365.1 904 77.3
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1361.7 950 74.9
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1355.1 938 75.3
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1355.1 945 74.4
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1354.3 937 75.8
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1354.0 938 75.2
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1353.6 958 75.1
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1352.4 926 76.6
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1348.2 943 75.1
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1347.4 933 75.2
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1346.6 939 74.8
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1341.6 937 74.8
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1340.1 964 74.3
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1340.1 927 74.9
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1339.7 897 77.8
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1336.6 946 73.5
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1328.5 832 80.6
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1328.5 932 74.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1326.2 954 73.3
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1322.0 936 73.4
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1315.1 879 77.1
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1300.8 897 76.3
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1299.3 930 74.1
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1299.3 923 72.8
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1297.3 925 72.8
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1297.3 979 71.2
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1296.2 939 72.8
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1291.9 925 72.1
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1289.6 906 73.2
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1289.2 941 72.6
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1288.1 923 72.3
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1279.6 1064 66.3
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1277.7 867 74.7
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1272.7 843 77.6
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1272.3 946 70.2
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1271.1 954 70.0
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1265.8 947 71.4
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1262.7 928 70.9
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1262.7 929 70.8
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1259.6 928 70.8
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1254.2 847 74.6
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1242.6 956 68.6
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1224.9 811 78.1
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1192.2 806 76.8
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1187.2 920 65.5
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1180.2 995 65.3
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1144.4 733 79.8
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1137.5 722 79.8
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1114.0 719 78.3
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 3.1e-304 1048.5 843 62.3
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 6.9e-304 1047.3 863 60.7
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 1.8e-288 996.1 871 57.9
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 2.2e-262 909.4 889 52.6
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.4e-248 863.6 649 69.8
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 1.7e-246 856.7 602 74.3
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 1.9e-245 853.2 579 73.2
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 2.8e-220 769.6 549 74.0
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 3.4e-218 762.7 495 76.2
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 4.2e-216 755.7 1086 44.7
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 1.5e-202 710.7 500 74.2
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 3.8e-201 706.1 547 69.5
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 3.8e-201 706.1 860 45.3
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 1.4e-200 704.1 533 64.0
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 1.1e-192 677.9 438 80.1
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 9.3e-192 674.9 850 44.0
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 2.3e-182 643.7 435 75.6
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 3.0e-182 643.3 458 74.7
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 1.0e-166 591.7 545 62.0
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 2.0e-162 577.4 339 83.2
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 7.2e-160 568.9 420 69.0
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 2.0e-130 471.1 709 40.8
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 2.9e-116 424.1 289 76.5
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 1.0e-113 415.6 339 68.1
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 3.5e-98 364.0 312 67.6
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 2.4e-94 351.3 262 61.8
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 9.3e-83 312.8 318 50.3
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 2.1e-82 311.6 311 58.5
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 6.0e-74 283.5 218 70.2
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 1.5e-72 278.9 209 67.0
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 1.8e-70 271.9 167 79.0
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 1.1e-67 262.7 187 72.2
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 3.9e-65 254.2 155 81.9
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 1.2e-58 232.6 192 67.7
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.2e-53 216.1 109 92.7
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 5.9e-53 213.8 262 46.9
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 1.8e-49 202.2 124 77.4
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 2.6e-48 198.4 120 80.0
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 6.1e-42 177.2 128 69.5
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 4.0e-41 174.5 96 85.4
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 3.0e-33 148.3 114 68.4
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 4.0e-33 147.9 134 61.2
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.5e-27 129.4 88 71.6
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 2.5e-27 128.6 76 86.8
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 2.4e-22 112.1 76 72.4
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 7.0e-22 110.5 114 55.3
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 9.2e-22 110.2 101 61.4
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 1.6e-21 109.4 94 67.0
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.2e-18 99.8 143 47.6
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 2.8e-18 98.6 87 58.6
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 4.7e-18 97.8 80 60.0
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 3.0e-17 95.1 92 54.3
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 2.6e-16 92.0 104 53.8
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 4.4e-16 91.3 43 97.7
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.7e-15 89.4 50 86.0
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 4.9e-15 87.8 391 24.3
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 1.8e-14 85.9 149 44.3
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 4.6e-13 81.3 379 24.5
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 7.8e-13 80.5 110 40.9
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.7e-12 79.3 374 23.8
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 5.0e-12 77.8 354 24.3
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.1e-11 76.6 358 22.9
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 1.1e-11 76.6 52 69.2
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 1.1e-11 76.6 543 20.8
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 9.5e-11 73.6 384 24.2
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 4.7e-10 71.2 506 22.1
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 4.7e-10 71.2 198 27.8
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 8.0e-10 70.5 473 24.1
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 3.1e-09 68.6 441 23.4
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 4.0e-09 68.2 538 22.5
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 4.0e-09 68.2 384 22.1
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 2.0e-08 65.9 199 26.1
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.6e-08 65.5 200 27.5
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.6e-08 65.5 284 25.4
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 3.4e-08 65.1 51 68.6
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 3.4e-08 65.1 141 36.2
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.3e-07 63.2 491 21.8
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 2.2e-07 62.4 217 26.7
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 4.9e-07 61.2 491 21.6
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 1.1e-06 60.1 82 43.9
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.1e-06 60.1 183 26.2


User provided reference genes

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