Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g022150 Medicago truncatula HOM05D001174 ORTHO05D001003 1.7e-31 138.7 66 100.0
Medtr0482s0010 Medicago truncatula HOM05D001174 ORTHO05D001003 1.1e-30 136.0 66 98.5
Medtr8g022110 Medicago truncatula HOM05D001174 ORTHO05D001003 1.1e-30 136.0 66 98.5
Medtr5g077750 Medicago truncatula HOM05D001174 ORTHO05D001003 3.4e-24 114.4 84 69.0
Psat2g046160 Pisum sativum HOM05D001174 ORTHO05D001003 4.1e-22 107.5 84 66.7
TPR.G11027 Trifolium pratense HOM05D001174 ORTHO05D001003 1.6e-21 105.5 84 65.5
LjContig00141g0000877 Lotus japonicus HOM05D001174 ORTHO05D001003 2.5e-19 98.2 84 59.5
Lalb_Chr10g0104241 Lupinus albus HOM05D001174 ORTHO05D001003 3.3e-19 97.8 84 59.5
Lalb_Chr17g0346001 Lupinus albus HOM05D001174 ORTHO05D001003 4.7e-18 94.0 84 59.5
arahy.Tifrunner.gnm1.ann1.7R2T36 Arachis hypogaea HOM05D001174 ORTHO05D001003 8.0e-18 93.2 84 59.5
arahy.Tifrunner.gnm1.ann1.TSBJ8P Arachis hypogaea HOM05D001174 ORTHO05D001003 8.0e-18 93.2 84 59.5
VMungo0647G2455 Vigna mungo HOM05D001174 ORTHO05D001003 1.0e-17 92.8 84 57.1
Glyma.02G243200 Glycine max HOM05D001174 ORTHO05D001003 1.4e-17 92.4 84 58.3
Phvul.008G238400 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 1.8e-17 92.0 84 56.0
Atru.chr1.2010 Acer truncatum HOM05D001174 ORTHO05D001003 2.8e-15 84.7 83 54.2
Ca_05841_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 4.9e-15 84.0 72 61.1
Glyma.14G212300 Glycine max HOM05D001174 ORTHO05D001003 8.3e-15 83.2 84 53.6
QL02p059620 Quercus lobata HOM05D001174 ORTHO05D001003 1.8e-14 82.0 83 51.8
Manes.01G121000 Manihot esculenta HOM05D001174 ORTHO05D001003 4.1e-14 80.9 83 48.2
ClCG10G001160 Citrullus lanatus HOM05D001174 ORTHO05D001003 2.7e-13 78.2 83 48.2
COL.COLO4_35484 Corchorus olitorius HOM05D001174 ORTHO05D001003 2.7e-13 78.2 82 48.8
Dinv05358 Davidia involucrata HOM05D001174 ORTHO05D001003 3.5e-13 77.8 84 47.6
Thhalv10018197m.g Eutrema salsugineum HOM05D001174 ORTHO05D001003 3.5e-13 77.8 84 47.6
TWI77G0649 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 3.5e-13 77.8 83 49.4
CiPaw.03G074800 Carya illinoinensis HOM05D001174 ORTHO05D001003 5.9e-13 77.0 81 49.4
Aa31LG2G2880 Aethionema arabicum HOM05D001174 ORTHO05D001003 7.8e-13 76.6 84 47.6
Sed0024967 Sechium edule HOM05D001174 ORTHO05D001003 7.8e-13 76.6 83 47.0
Sp5g21230 Schrenkiella parvula HOM05D001174 ORTHO05D001003 1.3e-12 75.9 84 47.6
Cc07_g13160 Coffea canephora HOM05D001174 ORTHO05D001003 1.7e-12 75.5 83 47.0
Dinv28177 Davidia involucrata HOM05D001174 ORTHO05D000292 1.7e-12 75.5 83 45.8
Migut.H02233 Erythranthe guttata HOM05D001174 ORTHO05D001003 1.7e-12 75.5 79 48.1
MBI13_g04214_MAGBIO Magnolia biondii HOM05D001174 ORTHO05D001003 2.3e-12 75.1 82 46.3
Actinidia17192 Actinidia chinensis HOM05D001174 ORTHO05D001003 2.9e-12 74.7 83 47.0
BcaC03g14733 Brassica carinata HOM05D001174 ORTHO05D001003 2.9e-12 74.7 82 47.6
A02p13500 Brassica napus HOM05D001174 ORTHO05D001003 2.9e-12 74.7 82 47.6
BolC2t08313H Brassica oleracea HOM05D001174 ORTHO05D001003 2.9e-12 74.7 82 47.6
BraA02t06408Z Brassica rapa HOM05D001174 ORTHO05D001003 2.9e-12 74.7 82 47.6
Ciclev10007029m.g Citrus clementina HOM05D001174 ORTHO05D001003 2.9e-12 74.7 83 48.2
Gohir.A02G108901 Gossypium hirsutum HOM05D001174 ORTHO05D001003 2.9e-12 74.7 81 48.1
Gorai.013G106900 Gossypium raimondii HOM05D001174 ORTHO05D001003 2.9e-12 74.7 81 48.1
MD09G1267100 Malus domestica HOM05D001174 ORTHO05D001003 2.9e-12 74.7 79 49.4
EL10Ac9g20685 Beta vulgaris HOM05D001174 ORTHO05D001003 3.9e-12 74.3 83 47.0
C02p21800 Brassica napus HOM05D001174 ORTHO05D001003 3.9e-12 74.3 82 47.6
CsaV3_3G001180 Cucumis sativus L. HOM05D001174 ORTHO05D001003 5.0e-12 73.9 80 47.5
PSO017G0079 Papaver somniferum HOM05D001174 ORTHO05D001003 5.0e-12 73.9 79 49.4
GSVIVG01030666001 Vitis vinifera HOM05D001174 ORTHO05D001003 5.0e-12 73.9 83 48.2
BcaB05g24156 Brassica carinata HOM05D001174 ORTHO05D001003 8.6e-12 73.2 79 48.1
Thecc.08G138800 Theobroma cacao HOM05D001174 ORTHO05D001003 8.6e-12 73.2 81 48.1
PGR142G4168 Punica granatum HOM05D001174 ORTHO05D001003 1.1e-11 72.8 81 45.7
Duzib093G1066 Durio zibethinus HOM05D001174 ORTHO05D001003 1.5e-11 72.4 81 48.1
FAN14G1145 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.5e-11 72.4 81 45.7
FAN05G0569 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.5e-11 71.6 81 44.4
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.5e-11 71.6 81 44.4
FAN14G3328 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.5e-11 71.6 81 44.4
FAN19G2209 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.5e-11 71.6 81 46.9
FAN28G1611 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.5e-11 71.6 81 46.9
Hma1.2p1_1223F.1_g268420 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 2.5e-11 71.6 84 45.2
Peaxi162Scf00124g01724 Petunia axillaris HOM05D001174 ORTHO05D001003 2.5e-11 71.6 83 44.6
RcHm_v2.0_Chr3g0450161 Rosa chinensis HOM05D001174 ORTHO05D001003 2.5e-11 71.6 81 44.4
Gohir.D03G062000 Gossypium hirsutum HOM05D001174 ORTHO05D001003 3.3e-11 71.2 81 45.7
Potri.017G135200 Populus trichocarpa HOM05D001174 ORTHO05D001003 3.3e-11 71.2 83 45.8
Carub.0002s1216 Capsella rubella HOM05D001174 ORTHO05D001003 4.3e-11 70.9 82 45.1
Cfa007781 Carpinus fangiana HOM05D001174 ORTHO05D001003 4.3e-11 70.9 84 42.9
Haze_14291 Corylus avellana HOM05D001174 ORTHO05D001003 4.3e-11 70.9 84 42.9
FvH4_6g02390 Fragaria vesca HOM05D001174 ORTHO05D001003 4.3e-11 70.9 81 44.4
MELO3C013808.2 Cucumis melo HOM05D001174 ORTHO05D001003 5.6e-11 70.5 80 46.2
TAR371G0619 Trochodendron aralioides HOM05D001174 ORTHO05D001003 5.6e-11 70.5 83 45.8
AL2G23810 Arabidopsis lyrata HOM05D001174 ORTHO05D001003 7.3e-11 70.1 84 42.9
CAN.G222.78 Capsicum annuum HOM05D001174 ORTHO05D001003 7.3e-11 70.1 83 43.4
Cfa010455 Carpinus fangiana HOM05D001174 ORTHO05D001003 7.3e-11 70.1 83 44.6
Haze_03409 Corylus avellana HOM05D001174 ORTHO05D001003 7.3e-11 70.1 79 46.8
FAN23G2924 Fragaria x ananassa HOM05D001174 ORTHO05D001003 7.3e-11 70.1 81 45.7
FAN26G1916 Fragaria x ananassa HOM05D001174 ORTHO05D001003 7.3e-11 70.1 81 45.7
Hma1.2p1_2053F.1_g312730 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 7.3e-11 70.1 83 43.4
Prupe.3G164800 Prunus persica HOM05D001174 ORTHO05D001003 7.3e-11 70.1 81 45.7
Rhsim10G0180900 Rhododendron simsii HOM05D001174 ORTHO05D001003 7.3e-11 70.1 81 44.4
Aa31LG2G8100 Aethionema arabicum HOM05D001174 ORTHO05D001003 9.5e-11 69.7 84 40.5
CANSAT54G1561 Cannabis sativa HOM05D001174 ORTHO05D001003 9.5e-11 69.7 84 42.9
RcHm_v2.0_Chr3g0492331 Rosa chinensis HOM05D001174 ORTHO05D001003 9.5e-11 69.7 81 45.7
Sc11g0004670 Simmondsia chinensis HOM05D001174 ORTHO05D001003 9.5e-11 69.7 82 43.9
CARHR292300 Cardamine hirsuta HOM05D001174 ORTHO05D001003 1.2e-10 69.3 77 45.5
FAN09G0888 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.2e-10 69.3 81 43.2
Nitab4.5_0009898g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 1.2e-10 69.3 79 45.6
AUR62037364 Chenopodium quinoa HOM05D001174 ORTHO05D001003 2.1e-10 68.6 83 43.4
SHI30122 Sapria himalayana HOM05D001174 ORTHO05D001003 2.1e-10 68.6 99 42.4
PGSC0003DMG400013247 Solanum tuberosum HOM05D001174 ORTHO05D001003 2.1e-10 68.6 79 44.3
AUR62042690 Chenopodium quinoa HOM05D001174 ORTHO05D001003 2.8e-10 68.2 83 43.4
THA.LOC104824122 Tarenaya hassleriana HOM05D001174 ORTHO05D001003 3.6e-10 67.8 84 41.7
Aqoxy2G00632 Aquilegia oxysepala HOM05D001174 ORTHO05D001003 4.7e-10 67.4 84 41.7
Eucgr.J01622 Eucalyptus grandis HOM05D001174 ORTHO05D001003 4.7e-10 67.4 84 42.9
FAN02G3809 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.7e-10 67.4 81 43.2
Hma1.2p1_1450F.1_g284190 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 4.7e-10 67.4 83 42.2
Solyc11g011560.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 4.7e-10 67.4 79 44.3
CDE05G2775 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 6.1e-10 67.0 79 44.3
Eucgr.J01636 Eucalyptus grandis HOM05D001174 ORTHO05D001003 6.1e-10 67.0 83 43.4
Lj4C258T9 Lonicera japonica HOM05D001174 ORTHO05D001003 6.1e-10 67.0 80 45.0
Nitab4.5_0001438g0110 Nicotiana tabacum HOM05D001174 ORTHO05D001003 6.1e-10 67.0 76 44.7
Sopen11g006430 Solanum pennellii HOM05D001174 ORTHO05D001003 6.1e-10 67.0 79 43.0
Eucgr.G02081 Eucalyptus grandis HOM05D001174 ORTHO05D001003 8.0e-10 66.6 83 44.6
HanXRQChr15g0483001 Helianthus annuus HOM05D001174 ORTHO05D001003 8.0e-10 66.6 81 40.7
Sabra17G0111100 Salix brachista HOM05D001174 ORTHO05D001003 8.0e-10 66.6 83 44.6
Sabra17G0114100 Salix brachista HOM05D001174 ORTHO05D001003 8.0e-10 66.6 83 44.6
AT1G66170 Arabidopsis thaliana HOM05D001174 ORTHO05D001003 1.8e-09 65.5 84 39.3
SGA_v2.0_scaffold108G30973 Striga asiatica HOM05D001174 ORTHO05D001003 1.8e-09 65.5 83 41.0
Oeu006311.1 Olea europaea HOM05D001174 ORTHO05D001003 2.3e-09 65.1 79 45.6
PSO063G2555 Papaver somniferum HOM05D001174 ORTHO05D001003 3.1e-09 64.7 79 43.0
Solyc03g116440.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 3.1e-09 64.7 82 40.2
Lsat_1_v5_gn_3_65760 Lactuca sativa HOM05D001174 ORTHO05D001003 4.0e-09 64.3 80 40.0
Sopen03g035340 Solanum pennellii HOM05D001174 ORTHO05D001003 4.0e-09 64.3 82 39.0
Thhalv10003728m.g Eutrema salsugineum HOM05D001174 ORTHO05D001003 1.2e-08 62.8 84 38.1
PGSC0003DMG400000605 Solanum tuberosum HOM05D001174 ORTHO05D001003 1.2e-08 62.8 82 37.8
Migut.E00500 Erythranthe guttata HOM05D001174 ORTHO05D001003 1.5e-08 62.4 80 40.0
PSO063G0042 Papaver somniferum HOM05D001174 ORTHO05D001003 1.5e-08 62.4 73 42.5
PSO832G0326 Papaver somniferum HOM05D001174 ORTHO05D001003 1.5e-08 62.4 73 42.5
PGR042G2215 Punica granatum HOM05D001174 ORTHO05D001003 2.0e-08 62.0 84 42.9
FvH4_4g29671 Fragaria vesca HOM05D001174 ORTHO05D001003 2.6e-08 61.6 76 39.5
AL3G44380 Arabidopsis lyrata HOM05D001174 ORTHO05D001003 4.4e-08 60.8 85 38.8
AT2G07714 Arabidopsis thaliana HOM05D001174 ORTHO05D001003 4.4e-08 60.8 85 38.8
CARHR282920 Cardamine hirsuta HOM05D001174 ORTHO05D001003 4.4e-08 60.8 85 38.8
Cpa.g.sc2.163 Carica papaya HOM05D001174 ORTHO05D001003 4.4e-08 60.8 84 39.3
Nn4g24573 Nelumbo nucifera HOM05D001174 ORTHO05D001003 4.4e-08 60.8 73 42.5
Rhsim09G0087500 Rhododendron simsii HOM05D001174 ORTHO05D001003 4.4e-08 60.8 76 42.1
CSS0048326 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 7.5e-08 60.1 83 39.8
Cpa.g.sc87.13 Carica papaya HOM05D001174 ORTHO05D001003 7.5e-08 60.1 79 39.2
Cpa.g.sc87.9 Carica papaya HOM05D001174 ORTHO05D001003 7.5e-08 60.1 79 39.2
Atru.chr11.817 Acer truncatum HOM05D001174 ORTHO05D001003 9.8e-08 59.7 83 41.0
Nitab4.5_0002257g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 9.8e-08 59.7 82 39.0
Nitab4.5_0006574g0070 Nicotiana tabacum HOM05D001174 ORTHO05D001003 9.8e-08 59.7 82 39.0
Rhsim10G0198500 Rhododendron simsii HOM05D001174 ORTHO05D001003 9.8e-08 59.7 82 36.6
Potri.008G137200 Populus trichocarpa HOM05D001174 ORTHO05D001003 1.3e-07 59.3 80 38.8
BcaB07g30373 Brassica carinata HOM05D001174 ORTHO05D001003 1.7e-07 58.9 84 35.7
CAN.G407.108 Capsicum annuum HOM05D001174 ORTHO05D001003 1.7e-07 58.9 82 39.0
THA.LOC104805977 Tarenaya hassleriana HOM05D001174 ORTHO05D001003 1.7e-07 58.9 64 48.4
DCAR_030292 Daucus carota HOM05D001174 ORTHO05D001003 2.2e-07 58.5 83 34.9
SHI04348 Sapria himalayana HOM05D001174 ORTHO05D001003 2.9e-07 58.2 85 37.6
Actinidia20104 Actinidia chinensis HOM05D001174 ORTHO05D001003 3.7e-07 57.8 73 39.7
SMO356G0690 Selaginella moellendorffii HOM05D001174 ORTHO05D001003 3.7e-07 57.8 73 39.7
GSVIVG01011588001 Vitis vinifera HOM05D001174 ORTHO05D001003 3.7e-07 57.8 73 38.4
Sabra08G0104600 Salix brachista HOM05D001174 ORTHO05D001003 4.9e-07 57.4 80 37.5
Eucgr.B02649 Eucalyptus grandis HOM05D001174 ORTHO05D001003 6.4e-07 57.0 83 34.9
SEGI_11319 Sequoiadendron giganteum HOM05D001174 ORTHO05D001003 6.4e-07 57.0 73 41.1
SEGI_30421 Sequoiadendron giganteum HOM05D001174 ORTHO05D001003 8.3e-07 56.6 73 41.1
VMungo1215G3405 Vigna mungo HOM05D001174 ORTHO05D001003 8.3e-07 56.6 73 39.7
Mapoly0039s0094 Marchantia polymorpha HOM05D001174 ORTHO05D001003 1.1e-06 56.2 77 37.7
Atru.chr11.992 Acer truncatum HOM05D001174 ORTHO05D001003 1.4e-06 55.8 73 39.7
arahy.Tifrunner.gnm1.ann1.TL38SF Arachis hypogaea HOM05D001174 ORTHO05D001003 1.4e-06 55.8 73 38.4
Lj2g0004740 Lotus japonicus HOM05D001174 ORTHO05D001003 1.4e-06 55.8 73 38.4
Rhsim09G0084700 Rhododendron simsii HOM05D001174 ORTHO05D001003 1.4e-06 55.8 83 34.9
Rhsim10G0198200 Rhododendron simsii HOM05D001174 ORTHO05D001003 1.4e-06 55.8 82 34.1
ATR0021G049 Amborella trichopoda HOM05D001174 ORTHO05D001003 1.9e-06 55.5 74 37.8
AagrBONN_evm.TU.Sc2ySwM_362.680 Anthoceros agrestis HOM05D001174 ORTHO05D001003 1.9e-06 55.5 73 38.4
Lsat_1_v5_gn_8_36300 Lactuca sativa HOM05D001174 ORTHO05D001003 1.9e-06 55.5 83 36.1
Pp3c9_20410 Physcomitrium patens HOM05D001174 ORTHO05D001003 1.9e-06 55.5 78 37.2
AagrBONN_evm.TU.Sc2ySwM_362.679 Anthoceros agrestis HOM05D001174 ORTHO05D001003 2.4e-06 55.1 73 38.4
Aqoxy3G03998 Aquilegia oxysepala HOM05D001174 ORTHO05D001003 2.4e-06 55.1 73 39.7
DCAR_026824 Daucus carota HOM05D001174 ORTHO05D001003 2.4e-06 55.1 73 37.0
Pp3c15_21830 Physcomitrium patens HOM05D001174 ORTHO05D001003 2.4e-06 55.1 73 37.0
PGR142G2244 Punica granatum HOM05D001174 ORTHO05D001003 2.4e-06 55.1 73 38.4
arahy.Tifrunner.gnm1.ann1.0IX9E9 Arachis hypogaea HOM05D001174 ORTHO05D001003 3.2e-06 54.7 73 37.0
EL10Ac4g09712 Beta vulgaris HOM05D001174 ORTHO05D001003 3.2e-06 54.7 73 39.7
Sc16g0009920 Simmondsia chinensis HOM05D001174 ORTHO05D001003 3.2e-06 54.7 73 37.0
Ciclev10017749m.g Citrus clementina HOM05D001174 ORTHO05D001003 4.1e-06 54.3 83 37.3
Carub.0005s0077 Capsella rubella HOM05D001174 ORTHO05D001003 5.4e-06 53.9 83 34.9
Potri.010G101300 Populus trichocarpa HOM05D001174 ORTHO05D001003 5.4e-06 53.9 73 37.0
TAR069G0001 Trochodendron aralioides HOM05D001174 ORTHO05D001003 5.4e-06 53.9 73 37.0
TAR629G3084 Trochodendron aralioides HOM05D001174 ORTHO05D001003 5.4e-06 53.9 73 37.0
AUR62000584 Chenopodium quinoa HOM05D001174 ORTHO05D001003 7.0e-06 53.5 73 38.4
AUR62006941 Chenopodium quinoa HOM05D001174 ORTHO05D001003 7.0e-06 53.5 73 38.4
Cc11_g05640 Coffea canephora HOM05D001174 ORTHO05D001003 7.0e-06 53.5 80 37.5
Phvul.002G085000 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 7.0e-06 53.5 73 38.4
CSS0039299 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 9.2e-06 53.1 83 31.3
CARHR144360 Cardamine hirsuta HOM05D001174 ORTHO05D001003 9.2e-06 53.1 81 34.6
Hma1.2p1_1525F.1_g288890 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 9.2e-06 53.1 73 37.0
Sabra10G0073900 Salix brachista HOM05D001174 ORTHO05D001003 9.2e-06 53.1 73 37.0
Sp2g13240 Schrenkiella parvula HOM05D001174 ORTHO05D001003 9.2e-06 53.1 84 33.3
Solyc04g008420.1 Solanum lycopersicum HOM05D001174 ORTHO05D001003 9.2e-06 53.1 73 37.0
Sopen04g003570 Solanum pennellii HOM05D001174 ORTHO05D001003 9.2e-06 53.1 73 37.0
PGSC0003DMG400037898 Solanum tuberosum HOM05D001174 ORTHO05D001003 9.2e-06 53.1 73 37.0
TWI34G0742 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 9.2e-06 53.1 79 34.2


User provided reference genes

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