Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 1.0e-34 149.8 94 100.0
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 2.5e-17 92.0 45 95.6
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 5.7e-17 90.9 47 89.4
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 5.7e-17 90.9 47 89.4
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 3.7e-16 88.2 45 91.1
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 8.2e-16 87.0 46 84.8
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.1e-15 86.7 44 90.9
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.1e-15 86.7 44 90.9
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.1e-15 86.7 44 90.9
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 1.8e-15 85.9 46 87.0
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 2.4e-15 85.5 44 90.9
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 2.4e-15 85.5 44 90.9
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 2.4e-15 85.5 44 90.9
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 3.1e-15 85.1 44 86.4
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 4.1e-15 84.7 44 84.1
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 4.1e-15 84.7 46 87.0
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 6.9e-15 84.0 51 74.5
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 1.2e-14 83.2 50 76.0
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 2.0e-14 82.4 44 84.1
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 2.0e-14 82.4 44 84.1
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 2.0e-14 82.4 44 84.1
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 2.0e-14 82.4 44 84.1
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 2.0e-14 82.4 44 86.4
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 2.6e-14 82.0 44 84.1
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 2.6e-14 82.0 44 84.1
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 2.6e-14 82.0 44 84.1
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 2.6e-14 82.0 44 84.1
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.4e-14 81.6 44 84.1
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 3.4e-14 81.6 45 82.2
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 3.4e-14 81.6 43 81.4
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 3.4e-14 81.6 44 84.1
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 4.5e-14 81.3 44 81.8
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.5e-14 81.3 44 84.1
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 4.5e-14 81.3 46 78.3
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 4.5e-14 81.3 44 84.1
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 5.9e-14 80.9 45 86.7
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 81.8
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 81.8
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 81.8
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 81.8
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 81.8
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 84.1
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 84.1
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 81.8
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 84.1
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 5.9e-14 80.9 44 84.1
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 7.7e-14 80.5 44 79.5
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 7.7e-14 80.5 44 81.8
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 7.7e-14 80.5 44 81.8
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 7.7e-14 80.5 44 81.8
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 7.7e-14 80.5 46 78.3
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 7.7e-14 80.5 44 84.1
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 7.7e-14 80.5 46 78.3
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.0e-13 80.1 44 79.5
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 1.0e-13 80.1 44 81.8
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 1.0e-13 80.1 44 84.1
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 1.3e-13 79.7 44 79.5
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 1.3e-13 79.7 44 79.5
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.3e-13 79.7 48 75.0
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.3e-13 79.7 48 75.0
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.3e-13 79.7 48 75.0
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 1.7e-13 79.3 44 81.8
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 1.7e-13 79.3 44 81.8
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 1.7e-13 79.3 44 81.8
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 1.7e-13 79.3 44 81.8
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 2.2e-13 79.0 44 79.5
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 2.2e-13 79.0 44 79.5
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 2.2e-13 79.0 44 79.5
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 2.2e-13 79.0 44 79.5
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 2.2e-13 79.0 44 81.8
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.2e-13 79.0 44 79.5
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.9e-13 78.6 44 79.5
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.9e-13 78.6 44 79.5
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 2.9e-13 78.6 42 83.3
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 3.8e-13 78.2 44 77.3
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 5.0e-13 77.8 46 73.9
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 6.5e-13 77.4 44 79.5
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 6.5e-13 77.4 46 73.9
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 6.5e-13 77.4 44 77.3
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 6.5e-13 77.4 44 79.5
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 1.1e-12 76.6 44 77.3
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 1.1e-12 76.6 46 76.1
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.4e-12 76.3 44 77.3
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 1.4e-12 76.3 44 79.5
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.4e-12 76.3 43 81.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 1.4e-12 76.3 44 77.3
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 2.5e-12 75.5 44 75.0
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 2.5e-12 75.5 44 79.5
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 3.2e-12 75.1 44 75.0
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 4.2e-12 74.7 45 80.0
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 5.5e-12 74.3 44 75.0
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 5.5e-12 74.3 44 75.0
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 5.5e-12 74.3 44 75.0
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 7.2e-12 73.9 44 75.0
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 9.4e-12 73.6 42 78.6
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 9.4e-12 73.6 48 68.8
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.2e-11 73.2 44 75.0
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 1.6e-11 72.8 44 72.7
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 2.1e-11 72.4 44 72.7
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 4.6e-11 71.2 52 63.5
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 6.1e-11 70.9 40 77.5
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 7.9e-11 70.5 44 70.5
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 7.9e-11 70.5 46 69.6
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 7.9e-11 70.5 48 66.7
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.4e-10 69.7 45 71.1
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 8.8e-10 67.0 44 68.2
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 7.4e-09 63.9 44 68.2


User provided reference genes

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