Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g022680 Medicago truncatula HOM05D003708 ORTHO05D004452 8.8e-33 142.9 66 100.0
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 5.0e-12 73.9 57 57.9
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 3.3e-11 71.2 53 58.5
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 1.6e-10 68.9 59 52.5
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 4.7e-10 67.4 54 55.6
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 4.7e-10 67.4 51 56.9
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 6.1e-10 67.0 51 58.8
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 8.0e-10 66.6 51 54.9
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.0e-09 66.2 51 54.9
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 1.4e-09 65.9 57 50.9
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 1.4e-09 65.9 59 52.5
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.8e-09 65.5 58 50.0
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.8e-09 65.5 53 54.7
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 3.1e-09 64.7 51 56.9
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 4.0e-09 64.3 59 50.8
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 4.0e-09 64.3 52 51.9
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.2e-09 63.9 54 55.6
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 5.2e-09 63.9 59 50.8
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.2e-09 63.9 62 51.6
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.2e-09 63.9 55 54.5
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 5.2e-09 63.9 53 49.1
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.2e-09 63.9 53 49.1
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.2e-09 63.9 53 49.1
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.2e-09 63.9 53 49.1
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.2e-09 63.9 53 49.1
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.8e-09 63.5 55 52.7
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 6.8e-09 63.5 51 54.9
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 8.9e-09 63.2 61 47.5
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 8.9e-09 63.2 52 51.9
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 8.9e-09 63.2 59 49.2
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 8.9e-09 63.2 71 49.3
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 8.9e-09 63.2 54 53.7
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 8.9e-09 63.2 52 50.0
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 8.9e-09 63.2 59 50.8
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 8.9e-09 63.2 54 50.0
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 8.9e-09 63.2 51 52.9
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.2e-08 62.8 54 48.1
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.2e-08 62.8 54 48.1
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.2e-08 62.8 59 50.8
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 1.2e-08 62.8 59 50.8
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 1.2e-08 62.8 47 57.4
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.2e-08 62.8 52 50.0
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 1.5e-08 62.4 58 48.3
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 1.5e-08 62.4 54 48.1
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 1.5e-08 62.4 54 48.1
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.5e-08 62.4 52 51.9
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 1.5e-08 62.4 52 50.0
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.5e-08 62.4 52 51.9
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 1.5e-08 62.4 67 46.3
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.5e-08 62.4 51 56.9
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 1.5e-08 62.4 52 48.1
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.5e-08 62.4 61 49.2
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 1.5e-08 62.4 62 50.0
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 2.0e-08 62.0 59 42.4
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 2.0e-08 62.0 52 50.0
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 2.0e-08 62.0 51 52.9
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 2.0e-08 62.0 52 48.1
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.0e-08 62.0 68 45.6
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 2.0e-08 62.0 60 50.0
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.6e-08 61.6 54 51.9
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 2.6e-08 61.6 62 46.8
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 2.6e-08 61.6 54 44.4
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 3.4e-08 61.2 51 51.0
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 3.4e-08 61.2 55 49.1
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 3.4e-08 61.2 55 49.1
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.4e-08 61.2 49 57.1
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.4e-08 61.2 50 54.0
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 3.4e-08 61.2 50 54.0
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 3.4e-08 61.2 65 52.3
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 4.4e-08 60.8 53 49.1
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 4.4e-08 60.8 53 49.1
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 4.4e-08 60.8 62 46.8
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 4.4e-08 60.8 43 60.5
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 4.4e-08 60.8 54 50.0
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 4.4e-08 60.8 53 50.9
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 5.8e-08 60.5 53 49.1
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 5.8e-08 60.5 62 46.8
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 5.8e-08 60.5 50 52.0
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 5.8e-08 60.5 50 54.0
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 5.8e-08 60.5 50 52.0
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 5.8e-08 60.5 50 52.0
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 5.8e-08 60.5 60 51.7
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 7.5e-08 60.1 59 47.5
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 7.5e-08 60.1 43 55.8
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 9.8e-08 59.7 53 47.2
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 9.8e-08 59.7 51 45.1
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.3e-07 59.3 53 47.2
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 1.3e-07 59.3 47 55.3
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 1.3e-07 59.3 51 45.1
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.3e-07 59.3 59 42.4
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.3e-07 59.3 52 46.2
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.3e-07 59.3 52 46.2
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.3e-07 59.3 52 46.2
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 1.3e-07 59.3 52 46.2
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 1.7e-07 58.9 52 50.0
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.7e-07 58.9 52 46.2
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.7e-07 58.9 58 48.3
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 1.7e-07 58.9 53 50.9
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.2e-07 58.5 49 51.0
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 2.2e-07 58.5 51 47.1
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 2.2e-07 58.5 51 49.0
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 2.2e-07 58.5 51 49.0
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 2.2e-07 58.5 60 48.3
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.2e-07 58.5 57 42.1
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.2e-07 58.5 52 48.1
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 2.2e-07 58.5 53 47.2
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 2.2e-07 58.5 51 49.0
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.9e-07 58.2 53 50.9
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 3.7e-07 57.8 43 55.8
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 3.7e-07 57.8 66 42.4
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 3.7e-07 57.8 54 48.1
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 8.3e-07 56.6 51 47.1
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 8.3e-07 56.6 47 51.1
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.1e-06 56.2 43 53.5
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 1.1e-06 56.2 49 51.0
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 1.1e-06 56.2 50 48.0
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.1e-06 56.2 53 45.3
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 1.4e-06 55.8 47 53.2
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 1.4e-06 55.8 49 49.0
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 1.9e-06 55.5 52 46.2
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 2.4e-06 55.1 48 52.1
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.4e-06 55.1 47 46.8
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.4e-06 55.1 52 48.1
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 2.4e-06 55.1 61 47.5
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 3.2e-06 54.7 53 45.3
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 4.1e-06 54.3 47 51.1
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 5.4e-06 53.9 64 40.6
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 5.4e-06 53.9 64 40.6
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 9.2e-06 53.1 44 54.5


User provided reference genes

Program Settings