Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.9e-252 875.5 513 100.0
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 2.9e-232 808.5 517 87.4
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.6e-230 802.7 514 84.4
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 6.3e-219 764.2 512 85.9
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 8.2e-219 763.8 514 85.2
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.1e-218 761.9 514 83.7
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 4.1e-218 761.5 515 83.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.0e-216 756.9 516 83.9
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.2e-211 739.2 524 84.5
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.4e-210 735.7 528 79.5
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.4e-210 735.7 528 79.5
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 6.5e-208 727.6 423 82.3
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.6e-206 721.8 423 81.8
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 7.4e-204 714.1 421 80.8
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 4.8e-203 711.4 421 78.6
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 4.8e-203 711.4 425 79.1
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.1e-202 708.4 421 80.3
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 5.3e-202 708.0 424 78.8
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 7.7e-201 704.1 424 79.2
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.3e-200 703.4 422 78.9
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 2.2e-200 702.6 434 77.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 2.2e-200 702.6 424 79.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 5.0e-200 701.4 424 77.8
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.5e-199 699.9 426 77.5
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.5e-199 699.9 423 79.4
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.5e-199 699.1 425 78.4
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 4.2e-199 698.4 426 77.7
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 4.2e-199 698.4 433 78.1
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 5.5e-199 698.0 425 78.1
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 9.4e-199 697.2 463 73.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.2e-198 696.8 427 77.8
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 2.7e-198 695.7 436 78.2
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 3.6e-198 695.3 427 77.5
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.7e-198 694.9 426 78.9
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 8.0e-198 694.1 424 79.0
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 8.0e-198 694.1 425 78.1
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 8.0e-198 694.1 425 79.1
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.0e-197 693.7 421 77.2
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 1.4e-197 693.3 421 77.4
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.4e-197 693.3 428 78.3
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.0e-197 692.2 426 78.4
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 5.2e-197 691.4 426 77.2
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 6.8e-197 691.0 426 78.2
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.8e-197 690.6 426 78.4
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.2e-196 690.3 427 76.6
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.0e-196 689.5 423 77.1
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.6e-196 689.1 428 76.9
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.1e-194 683.7 423 77.1
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.4e-194 683.3 438 75.1
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 3.1e-194 682.2 422 76.5
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 4.1e-194 681.8 438 75.1
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 3.5e-193 678.7 425 76.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 4.5e-193 678.3 423 77.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 7.7e-193 677.6 419 76.8
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.0e-192 677.2 428 76.2
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 7.2e-191 671.0 421 77.9
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 4.7e-190 668.3 426 77.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 6.1e-190 667.9 395 81.0
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 3.0e-189 665.6 422 75.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 7.5e-188 661.0 458 72.5
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 2.8e-187 659.1 396 79.3
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.9e-185 651.4 428 75.0
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 7.7e-185 651.0 432 74.8
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.3e-184 649.4 466 68.9
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 6.6e-184 647.9 427 74.7
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.1e-183 647.1 427 74.7
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 7.2e-183 644.4 425 72.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.6e-180 636.0 426 71.6
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.3e-179 633.6 424 71.7
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.7e-179 633.3 350 85.4
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 6.4e-179 631.3 417 73.1
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 8.3e-179 630.9 454 69.4
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 2.4e-178 629.4 423 71.6
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 5.4e-178 628.2 390 75.9
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.6e-177 626.7 425 71.1
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.0e-176 624.0 438 69.9
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.3e-176 623.6 424 70.5
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 3.9e-176 622.1 424 75.5
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 8.6e-176 620.9 425 70.6
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 2.1e-174 616.3 419 70.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-173 613.6 422 70.1
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 1.2e-172 610.5 423 69.7
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 2.6e-172 609.4 425 72.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 1.7e-171 606.7 428 68.9
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.2e-171 606.3 423 70.0
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.4e-170 603.6 426 69.0
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.9e-170 603.2 435 68.0
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 4.1e-170 602.1 430 68.4
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 5.4e-170 601.7 426 71.1
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.2e-169 600.5 435 67.8
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.2e-169 600.5 431 70.3
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.6e-169 598.6 375 75.7
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.3e-168 597.0 423 69.3
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 3.9e-168 595.5 315 89.2
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.5e-167 593.6 436 67.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-166 589.0 400 73.0
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.0e-165 585.5 388 74.2
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.4e-162 577.0 394 70.6
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 4.1e-162 575.5 422 65.4
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.6e-161 573.5 424 68.2
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 7.8e-161 571.2 357 76.2
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.6e-158 563.5 425 66.1
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.1e-158 563.1 422 64.7
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.7e-153 546.2 369 72.1
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.0e-152 542.7 397 66.0
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.2e-150 537.3 306 80.4
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.6e-150 535.8 445 61.8
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.2e-145 520.8 344 72.1
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.6e-137 493.8 328 72.9
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 6.9e-133 478.4 340 69.4
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 4.6e-129 465.7 293 75.4
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.3e-128 464.2 436 63.5
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.8e-128 463.8 381 59.6
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 4.3e-127 459.1 312 77.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 4.9e-123 445.7 447 55.7
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.5e-116 424.1 363 58.7
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.2e-110 403.7 330 60.6
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.8e-109 400.6 325 55.7
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.0e-107 392.5 327 60.6
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 4.1e-101 372.9 218 78.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.2e-94 350.5 191 84.8
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.9e-90 337.4 427 48.7
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 4.8e-86 322.8 259 64.5
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.2e-82 309.7 230 68.3
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 6.8e-56 222.6 112 92.0
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 2.0e-55 221.1 262 50.8
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.6e-52 211.5 193 57.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 6.4e-46 189.5 138 71.0
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 3.6e-41 173.7 143 65.7
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.5e-34 151.8 324 34.6
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 2.7e-28 131.0 77 76.6
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 4.6e-28 130.2 79 78.5
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 3.9e-27 127.1 108 59.3
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 8.7e-27 125.9 271 34.3
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.5e-23 113.6 80 68.8
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 8.7e-19 99.4 211 32.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.6e-15 87.8 52 75.0
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.8e-08 65.1 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 2.0e-07 61.6 28 92.9


User provided reference genes

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