Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1633.6 803 100.0
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1561.6 802 94.4
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1549.6 804 93.9
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1526.9 801 92.6
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1425.6 803 85.3
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1416.4 803 85.1
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1415.2 802 83.9
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1397.5 802 83.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1394.4 806 82.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1382.1 803 81.6
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1380.2 809 82.2
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1375.9 803 81.1
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 804 80.7
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1364.4 804 82.2
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1364.0 803 82.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1358.2 804 82.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1358.2 804 81.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1357.4 803 82.1
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1356.3 806 80.9
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1354.3 805 80.7
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1354.0 806 81.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1353.6 808 80.3
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1352.8 804 81.1
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1352.0 804 80.3
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1351.7 808 81.6
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1349.0 808 80.7
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1347.8 804 79.9
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1347.0 808 80.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1340.1 811 80.5
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1339.3 815 79.0
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1338.6 808 80.2
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1332.8 807 79.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1332.8 808 79.2
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1330.1 805 79.1
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 807 78.9
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1327.4 807 80.3
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1326.6 807 80.2
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1323.1 807 80.0
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1323.1 807 80.2
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1320.8 808 79.5
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1319.7 807 78.8
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1318.5 808 79.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1318.1 808 79.2
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1303.1 812 77.7
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1301.2 808 77.4
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1297.3 828 77.4
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1295.4 884 72.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1287.3 808 76.9
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 804 77.5
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1282.7 817 75.2
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 804 78.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 804 76.4
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1280.4 813 77.0
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 805 76.6
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 806 75.9
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1270.8 803 75.8
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 802 76.3
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1268.8 804 75.2
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 803 75.8
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 803 75.6
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 804 75.4
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 803 75.5
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 804 75.9
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 808 75.7
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 804 75.5
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 803 75.5
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 803 75.5
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 803 75.0
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 794 76.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 804 75.1
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 804 75.5
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 804 75.1
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 805 75.0
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 803 74.5
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 803 74.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 804 74.9
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 805 74.7
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1242.3 804 74.6
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 808 75.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 804 74.3
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1239.2 803 74.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1235.7 803 73.8
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 801 74.5
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 859 70.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1217.6 814 72.5
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1216.1 856 69.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1214.1 805 72.0
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1212.2 780 75.5
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 805 72.8
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1211.1 864 68.9
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1210.3 805 72.7
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1205.7 807 72.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1192.2 807 72.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1191.4 807 74.5
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1188.3 808 70.9
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 804 71.0
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1184.1 803 72.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 822 70.9
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1179.5 762 74.9
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1175.2 804 69.8
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1167.9 810 69.4
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1167.5 909 65.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1165.2 808 71.2
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1163.3 810 68.1
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1157.5 963 63.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1142.1 961 62.5
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1124.0 783 69.7
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1117.4 805 69.4
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 811 64.9
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1077.8 819 64.0
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.1e-310 1069.7 805 67.1
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 3.6e-306 1054.7 809 67.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.7e-293 1011.9 605 80.0
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 5.3e-289 997.7 800 61.0
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.7e-277 958.7 804 60.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 4.5e-240 835.1 778 58.0
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 4.9e-194 682.2 856 45.7
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 8.1e-189 664.8 381 82.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.1e-164 584.7 837 41.3
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.9e-155 552.4 804 42.7
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.3e-154 551.2 857 39.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.5e-145 519.2 935 35.3
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 6.3e-125 452.6 418 56.0
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 2.3e-119 434.1 357 63.9
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 6.3e-117 426.0 316 65.2
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 6.0e-107 392.9 244 75.0
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.7e-101 373.6 235 76.6
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.3e-72 278.9 185 73.0
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.5e-65 255.4 173 73.4
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 6.0e-59 233.4 303 44.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.6e-51 207.2 189 59.3
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.6e-43 182.2 141 68.8
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 5.9e-38 163.7 104 76.9
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 3.8e-37 161.0 90 81.1
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 8.5e-37 159.8 270 40.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.6e-33 148.3 106 65.1
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 5.7e-33 147.1 100 67.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.7e-32 144.4 120 62.5
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 8.5e-29 133.3 181 44.8
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.2e-28 130.2 94 69.1
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.6e-27 129.0 110 54.5
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.3e-26 125.2 89 73.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.9e-26 124.4 118 56.8
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.1e-25 122.9 257 33.5
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.7e-24 117.9 190 40.5
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.6e-22 112.5 177 39.0
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.5e-20 105.9 109 51.4
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.9e-20 105.5 69 73.9
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 4.2e-20 104.4 59 84.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 9.4e-20 103.2 68 76.5
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.0e-18 97.8 50 86.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.1e-15 88.2 73 63.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.3e-15 87.4 43 86.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.0e-13 83.2 136 45.6
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.7e-11 75.1 128 35.9
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 6.1e-11 73.9 59 52.5
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 6.1e-11 73.9 57 66.7
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.1e-07 63.2 57 57.9
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.1e-07 63.2 439 21.0
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.4e-07 62.8 73 50.7
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.8e-07 62.4 57 57.9
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 3.1e-07 61.6 68 52.9
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.0e-07 60.5 54 59.3
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 7.0e-07 60.5 57 54.4
Medtr4g077470 Medicago truncatula HOM05D004364 ORTHO05D258300 1.6e-06 59.3 74 48.6
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 57.4
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 57.4
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 57.4
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.0e-06 58.9 54 57.4


User provided reference genes

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