Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 0.0e+00 1426.8 748 100.0
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 0.0e+00 1226.1 704 93.2
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 0.0e+00 1136.7 706 86.1
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 0.0e+00 1135.6 617 94.8
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 0.0e+00 1110.9 701 84.5
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 0.0e+00 1100.9 706 83.6
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 0.0e+00 1098.2 701 84.0
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 0.0e+00 1089.7 701 83.0
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 0.0e+00 1089.3 708 84.6
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 2.7e-303 1045.0 706 78.2
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 2.4e-299 1031.9 712 77.7
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 4.0e-299 1031.2 708 78.7
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 2.9e-297 1025.0 712 76.0
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 6.6e-294 1013.8 709 75.0
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 8.7e-294 1013.4 713 77.1
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.5e-293 1011.9 691 76.7
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 2.5e-293 1011.9 761 72.5
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 8.1e-292 1006.9 714 76.2
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 5.3e-291 1004.2 684 77.5
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 9.0e-291 1003.4 680 77.5
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 9.0e-291 1003.4 717 76.4
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.3e-289 999.6 702 75.6
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 2.2e-289 998.8 706 76.5
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 6.4e-289 997.3 704 76.3
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 4.2e-288 994.6 711 73.8
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 1.6e-287 992.6 719 74.7
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.3e-286 988.8 664 78.2
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 3.9e-286 988.0 701 76.2
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 5.1e-286 987.6 721 74.6
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 6.6e-286 987.3 711 73.7
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.3e-284 983.0 704 74.6
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.6e-284 982.6 711 75.8
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.8e-283 979.2 685 76.2
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 4.0e-283 978.0 727 73.2
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 5.3e-283 977.6 708 73.7
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-282 976.5 708 73.6
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 4.5e-282 974.5 709 75.3
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.3e-281 973.0 682 75.4
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 2.2e-281 972.2 719 73.7
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.7e-279 965.3 680 74.0
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 5.6e-277 957.6 598 81.3
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 5.6e-277 957.6 635 77.2
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.6e-276 956.1 758 69.0
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 2.1e-276 955.7 679 75.7
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 6.2e-276 954.1 635 78.0
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 6.2e-276 954.1 778 69.0
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.8e-275 952.6 706 72.2
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 3.1e-275 951.8 711 72.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.2e-274 949.9 708 73.4
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.2e-274 949.9 633 77.6
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.2e-274 949.9 631 77.7
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.2e-274 949.9 629 77.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.5e-274 949.5 703 72.8
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.4e-274 948.3 702 73.6
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.3e-273 946.4 679 74.2
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 8.4e-273 943.7 740 68.1
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.1e-272 943.3 746 70.6
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 5.5e-272 941.0 716 71.9
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 5.5e-272 941.0 711 72.0
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 3.5e-271 938.3 646 76.0
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 3.5e-271 938.3 693 72.6
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 7.9e-271 937.2 691 74.2
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.0e-270 936.8 646 75.9
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.9e-270 934.9 690 72.0
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.1e-270 934.5 703 72.5
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 2.5e-269 932.2 787 66.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 9.6e-269 930.2 716 72.3
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 1.3e-268 929.9 704 71.2
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 2.1e-268 929.1 649 75.2
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 8.2e-268 927.2 651 75.0
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 9.0e-267 923.7 680 69.9
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.0e-266 922.5 562 80.6
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.5e-266 921.4 657 75.3
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.1e-263 912.5 700 72.0
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.9e-261 906.0 681 69.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 5.7e-261 904.4 704 68.3
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.3e-260 903.3 650 72.6
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 8.2e-260 900.6 666 72.7
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 8.2e-260 900.6 505 85.0
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 2.4e-259 899.0 494 86.8
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.6e-258 895.6 680 68.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 7.7e-258 894.0 673 72.7
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 1.0e-257 893.6 681 68.1
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 5.0e-257 891.3 469 92.3
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.1e-256 890.2 670 69.7
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.4e-256 889.8 708 66.7
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.4e-251 872.5 713 69.1
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.9e-251 870.9 658 69.3
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 6.1e-247 857.8 621 74.2
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 3.0e-246 855.5 695 68.6
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 3.9e-246 855.1 698 68.8
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.9e-242 841.3 783 59.6
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.5e-241 837.4 722 65.9
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.2e-232 808.5 612 67.8
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.0e-227 791.2 527 77.4
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.3e-222 776.2 715 64.3
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.7e-220 770.0 697 59.4
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.2e-218 763.8 608 64.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.2e-213 747.3 690 60.7
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.2e-202 710.7 497 68.4
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.2e-197 694.1 395 83.8
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.3e-185 654.1 366 88.8
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 2.1e-183 646.7 334 91.0
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.5e-181 640.6 543 58.7
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.1e-171 607.8 496 59.7
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.2e-170 604.4 471 62.0
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.1e-167 591.7 688 54.8
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.4e-163 580.9 515 65.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.3e-143 514.6 518 60.4
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 6.5e-132 475.7 505 49.7
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 2.2e-124 450.7 561 44.7
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.9e-123 447.6 494 52.8
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.4e-118 430.6 255 78.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 4.4e-112 409.8 559 43.5
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.0e-101 374.4 570 38.2
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.4e-97 361.7 214 81.3
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.5e-96 358.2 409 56.2
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 6.8e-89 332.8 176 87.5
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.0e-85 319.7 230 83.9
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.3e-84 317.8 229 83.8
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.5e-83 315.1 263 63.9
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.1e-70 270.4 157 80.3
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.3e-63 248.8 328 53.7
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.1e-58 231.5 163 68.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-48 198.7 267 48.3
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.2e-42 176.8 95 85.3
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.4e-32 144.4 100 73.0
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.4e-25 122.5 260 36.2
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.6e-24 118.2 76 80.3
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.2e-21 109.4 105 60.0
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 7.7e-16 90.1 186 46.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.2e-15 88.6 279 33.3
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-11 76.3 153 39.9
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.0e-11 75.5 153 39.2
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.7e-10 72.4 179 47.5
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 2.6e-08 65.1 50 66.0
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.5e-07 60.5 80 46.2


User provided reference genes

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