Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 1.3e-243 846.3 515 100.0
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 1.9e-199 699.5 480 89.0
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 1.1e-143 514.2 526 67.3
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 1.2e-140 504.2 520 66.0
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 1.5e-135 487.3 526 64.3
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 5.8e-132 475.3 517 63.8
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 3.9e-120 436.0 536 59.5
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 1.5e-119 434.1 520 59.4
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 3.7e-118 429.5 436 66.5
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 8.2e-118 428.3 435 65.5
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 9.4e-106 388.3 536 53.5
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 3.6e-105 386.3 436 61.0
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 1.8e-101 374.0 523 55.1
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 7.0e-101 372.1 418 61.5
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.6e-100 370.2 520 53.5
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 1.7e-99 367.5 442 59.0
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 5.0e-99 365.9 435 58.6
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.5e-98 364.4 436 57.8
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 4.7e-97 359.4 437 59.0
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 8.0e-97 358.6 436 58.9
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 1.8e-96 357.5 523 53.7
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 2.3e-96 357.1 437 57.0
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 3.0e-96 356.7 432 58.1
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 2.0e-95 354.0 539 51.0
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 2.2e-94 350.5 539 51.2
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 6.3e-94 349.0 453 57.2
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 8.3e-94 348.6 453 57.8
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 2.0e-92 344.0 427 58.1
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 2.2e-91 340.5 447 57.3
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 5.0e-91 339.3 438 55.5
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 3.6e-89 333.2 417 58.3
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 3.6e-89 333.2 434 56.0
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 1.0e-88 331.6 437 55.8
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 2.3e-88 330.5 437 58.1
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 4.0e-88 329.7 438 43.6
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 8.8e-88 328.6 528 50.0
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 1.5e-87 327.8 440 54.5
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 1.7e-86 324.3 439 56.5
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 3.7e-86 323.2 495 51.5
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 5.4e-85 319.3 438 55.7
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 5.4e-85 319.3 438 55.7
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 7.0e-85 318.9 436 56.0
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.5e-84 316.6 434 54.8
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 5.9e-84 315.8 434 55.3
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 2.9e-83 313.5 437 55.8
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 1.5e-82 311.2 435 53.3
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 2.5e-82 310.5 427 53.4
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 4.2e-82 309.7 504 50.2
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 5.5e-82 309.3 435 54.5
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 5.5e-82 309.3 433 54.5
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 1.2e-81 308.1 436 53.7
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 1.0e-80 305.1 425 53.6
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 1.8e-80 304.3 435 53.1
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 8.9e-80 302.0 425 53.4
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 8.9e-80 302.0 435 52.9
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 4.4e-79 299.7 396 57.8
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 4.4e-79 299.7 444 53.8
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 5.7e-79 299.3 414 55.8
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 9.8e-79 298.5 432 53.2
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 1.7e-78 297.7 434 52.5
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 2.2e-78 297.4 373 59.8
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 2.2e-78 297.4 514 47.9
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 2.8e-78 297.0 528 46.2
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 2.8e-78 297.0 417 56.4
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.7e-78 296.6 438 52.7
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 6.3e-78 295.8 437 53.8
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 6.3e-78 295.8 425 52.5
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 6.3e-78 295.8 433 52.0
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 1.4e-77 294.7 425 52.5
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 1.4e-77 294.7 432 50.7
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 3.2e-77 293.5 435 52.2
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 4.1e-77 293.1 428 52.3
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 7.0e-77 292.4 428 54.0
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 9.2e-77 292.0 425 52.7
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 9.2e-77 292.0 442 51.6
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 1.2e-76 291.6 436 52.8
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 2.0e-76 290.8 391 56.5
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 4.5e-76 289.7 425 51.8
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 7.8e-76 288.9 421 53.4
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 1.0e-75 288.5 425 52.5
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 1.0e-75 288.5 425 52.5
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 1.3e-75 288.1 372 43.0
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 2.9e-75 287.0 426 50.9
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.9e-75 286.6 438 52.1
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 8.6e-75 285.4 438 50.5
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 1.9e-74 284.3 437 51.0
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 2.5e-74 283.9 392 56.1
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 2.5e-74 283.9 525 46.5
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 4.3e-74 283.1 424 54.2
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 1.2e-73 281.6 397 53.4
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 3.6e-73 280.0 432 51.2
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 2.3e-72 277.3 430 50.0
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 6.8e-72 275.8 429 51.3
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 8.9e-72 275.4 366 57.9
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 2.0e-71 274.2 392 45.2
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 2.6e-71 273.9 437 51.7
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 3.4e-71 273.5 437 50.8
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 5.8e-71 272.7 402 53.0
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 1.7e-70 271.2 357 58.8
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 3.7e-70 270.0 431 50.6
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 5.4e-69 266.2 416 51.4
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 1.2e-68 265.0 421 52.0
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 1.7e-67 261.2 350 60.3
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 3.3e-66 256.9 432 49.8
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 8.1e-65 252.3 426 37.1
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 5.2e-64 249.6 524 45.2
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 8.9e-64 248.8 437 47.1
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 2.0e-63 247.7 384 55.7
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 4.1e-61 240.0 384 52.6
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 1.7e-59 234.6 443 48.1
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 2.3e-59 234.2 414 48.1
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 3.9e-59 233.4 430 48.4
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 1.1e-58 231.9 438 47.5
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 5.2e-56 223.0 435 42.5
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 8.3e-54 215.7 194 54.6
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 7.1e-53 212.6 428 43.0
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 1.6e-44 184.9 318 54.1
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 1.9e-37 161.4 286 55.6
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 3.3e-34 150.6 139 56.1
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 5.3e-32 143.3 125 51.2
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 1.2e-31 142.1 176 43.8
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 1.6e-25 121.7 330 28.5
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 1.4e-24 118.6 164 37.8
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 1.4e-24 118.6 138 46.4
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 2.8e-17 94.4 396 36.4
Psat2g025200 Pisum sativum HOM05D021680 ORTHO05D000023 5.5e-13 80.1 98 45.9
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 1.2e-12 79.0 241 31.5
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 2.3e-11 74.7 442 36.7
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 7.4e-10 69.7 176 34.1
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 7.4e-10 69.7 176 30.1
Nitab4.5_0006715g0020 Nicotiana tabacum HOM05D005775 ORTHO05D000023 1.1e-08 65.9 171 29.2
SalBow6G2882 Salvia bowleyana HOM05D006414 ORTHO05D007780 3.1e-08 64.3 176 30.7
SalBow6G7209 Salvia bowleyana HOM05D006414 ORTHO05D007780 3.1e-08 64.3 176 30.7
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 4.1e-08 63.9 241 26.6
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 4.1e-08 63.9 241 26.6
SalBow6G5148 Salvia bowleyana HOM05D006414 ORTHO05D007780 4.1e-08 63.9 176 30.7
Oeu028531.1 Olea europaea HOM05D006414 ORTHO05D007780 5.3e-08 63.5 176 29.5
Dinv19510 Davidia involucrata HOM05D006414 ORTHO05D007780 9.0e-08 62.8 176 30.7
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 9.0e-08 62.8 176 30.1
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 9.0e-08 62.8 176 30.1
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 1.2e-07 62.4 176 29.5
Solyc04g054270.4 Solanum lycopersicum HOM05D006414 ORTHO05D007780 2.0e-07 61.6 167 29.3
TPR.G2171 Trifolium pratense HOM05D006414 ORTHO05D007780 2.0e-07 61.6 131 30.5
QL06p032569 Quercus lobata HOM05D006414 ORTHO05D007780 3.4e-07 60.8 127 32.3
MSTRG.2541 Avicennia marina HOM05D006414 ORTHO05D007780 4.5e-07 60.5 182 28.6
Sopen04g023860 Solanum pennellii HOM05D006414 ORTHO05D007780 4.5e-07 60.5 167 29.3
PGSC0003DMG400012802 Solanum tuberosum HOM05D006414 ORTHO05D007780 4.5e-07 60.5 167 29.3
Migut.H02413 Erythranthe guttata HOM05D006414 ORTHO05D007780 5.9e-07 60.1 182 28.0
Sabra05G0067400 Salix brachista HOM05D006414 ORTHO05D007780 7.7e-07 59.7 187 28.9
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 1.0e-06 59.3 160 31.2
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 1.0e-06 59.3 160 31.2
Potri.005G082400 Populus trichocarpa HOM05D006414 ORTHO05D007780 1.0e-06 59.3 187 28.3
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 1.3e-06 58.9 129 34.1
Haze_14271 Corylus avellana HOM05D006414 ORTHO05D007780 1.3e-06 58.9 127 31.5
Lj2A560T64 Lonicera japonica HOM05D006414 ORTHO05D007780 1.3e-06 58.9 252 27.0
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 1.3e-06 58.9 116 27.6
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 1.7e-06 58.5 131 32.8
Nitab4.5_0000156g0020 Nicotiana tabacum HOM05D006414 ORTHO05D007780 1.7e-06 58.5 182 27.5
Peaxi162Scf01651g00012 Petunia axillaris HOM05D006414 ORTHO05D007780 1.7e-06 58.5 127 30.7
CAN.G382.6 Capsicum annuum HOM05D006414 ORTHO05D007780 2.2e-06 58.2 167 28.1
DCAR_000987 Daucus carota HOM05D006414 ORTHO05D007780 2.9e-06 57.8 178 29.2
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 2.9e-06 57.8 183 27.3
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 2.9e-06 57.8 98 33.7
Nitab4.5_0002133g0010 Nicotiana tabacum HOM05D006414 ORTHO05D007780 3.8e-06 57.4 145 29.0
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 5.0e-06 57.0 129 32.6
Eucgr.A01491 Eucalyptus grandis HOM05D001779 ORTHO05D001753 5.0e-06 57.0 95 38.9
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 5.0e-06 57.0 95 35.8
unitig_28.g29440 Utricularia gibba HOM05D006414 ORTHO05D007780 5.0e-06 57.0 175 29.1
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 6.5e-06 56.6 95 35.8
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 6.5e-06 56.6 95 35.8
Potri.002G243600 Populus trichocarpa HOM05D001779 ORTHO05D001753 6.5e-06 56.6 98 33.7
Sp3g05350 Schrenkiella parvula HOM05D001779 ORTHO05D001753 6.5e-06 56.6 97 35.1
CARHR091140 Cardamine hirsuta HOM05D006749 ORTHO05D008352 8.5e-06 56.2 96 31.2


User provided reference genes

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