Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g039780 Medicago truncatula HOM05D004115 ORTHO05D005004 1.5e-113 412.9 217 100.0
Medtr6g088270 Medicago truncatula HOM05D004115 ORTHO05D005004 3.4e-57 225.7 171 77.8
Psat1g044600 Pisum sativum HOM05D004115 ORTHO05D005004 2.1e-54 216.5 171 74.9
Ca_25549_v3 Cicer arietinum L. HOM05D004115 ORTHO05D005004 6.0e-54 214.9 168 75.0
TPR.G34916 Trifolium pratense HOM05D004115 ORTHO05D005004 1.0e-53 214.2 171 75.4
Glyma.09G193300 Glycine max HOM05D004115 ORTHO05D005004 2.3e-53 213.0 171 72.5
Glyma.01G145400 Glycine max HOM05D004115 ORTHO05D005004 2.5e-52 209.5 171 71.3
VMungo0464G0214 Vigna mungo HOM05D004115 ORTHO05D005004 7.3e-52 208.0 171 70.8
Phvul.004G168100 Phaseolus vulgaris HOM05D004115 ORTHO05D005004 2.8e-51 206.1 171 69.0
Lj2g0008578 Lotus japonicus HOM05D004115 ORTHO05D005004 1.1e-50 204.1 166 72.3
Lalb_Chr14g0371681 Lupinus albus HOM05D004115 ORTHO05D005004 3.1e-50 202.6 171 67.3
Thecc.09G105600 Theobroma cacao HOM05D004115 ORTHO05D005004 4.0e-50 202.2 163 69.9
Actinidia09435 Actinidia chinensis HOM05D004115 ORTHO05D005004 1.2e-49 200.7 165 69.1
Actinidia20401 Actinidia chinensis HOM05D004115 ORTHO05D005004 1.2e-49 200.7 167 68.9
Cfa003224 Carpinus fangiana HOM05D004115 ORTHO05D005004 1.2e-49 200.7 172 69.2
Haze_25784 Corylus avellana HOM05D004115 ORTHO05D005004 1.2e-49 200.7 172 69.2
Lalb_Chr24g0397481 Lupinus albus HOM05D004115 ORTHO05D005004 1.5e-49 200.3 170 67.1
arahy.Tifrunner.gnm1.ann1.SK3XBC Arachis hypogaea HOM05D004115 ORTHO05D005004 2.0e-49 199.9 166 67.5
Duzib150G0111 Durio zibethinus HOM05D004115 ORTHO05D005004 2.0e-49 199.9 166 69.3
FAN19G0797 Fragaria x ananassa HOM05D004115 ORTHO05D005004 3.4e-49 199.1 163 71.2
FAN23G0635 Fragaria x ananassa HOM05D004115 ORTHO05D005004 3.4e-49 199.1 163 71.2
FAN28G0287 Fragaria x ananassa HOM05D004115 ORTHO05D005004 3.4e-49 199.1 163 71.2
arahy.Tifrunner.gnm1.ann1.T3DUTL Arachis hypogaea HOM05D004115 ORTHO05D005004 5.8e-49 198.4 166 66.9
RcHm_v2.0_Chr2g0091281 Rosa chinensis HOM05D004115 ORTHO05D005004 5.8e-49 198.4 163 70.6
Aqoxy7G03864 Aquilegia oxysepala HOM05D004115 ORTHO05D005004 7.6e-49 198.0 169 67.5
CANSAT56G3189 Cannabis sativa HOM05D004115 ORTHO05D005004 7.6e-49 198.0 165 69.7
FAN26G0981 Fragaria x ananassa HOM05D004115 ORTHO05D005004 7.6e-49 198.0 163 70.6
FAN26G2080 Fragaria x ananassa HOM05D004115 ORTHO05D005004 7.6e-49 198.0 163 70.6
Atru.chr7.1389 Acer truncatum HOM05D004115 ORTHO05D005004 9.9e-49 197.6 166 66.9
FvH4_1g05650 Fragaria vesca HOM05D004115 ORTHO05D005004 9.9e-49 197.6 163 70.6
Manes.16G112600 Manihot esculenta HOM05D004115 ORTHO05D005004 9.9e-49 197.6 215 57.7
Dinv41639 Davidia involucrata HOM05D004115 ORTHO05D005004 1.3e-48 197.2 162 69.8
MD15G1191900 Malus domestica HOM05D004115 ORTHO05D005004 1.3e-48 197.2 163 69.3
Gohir.D06G063300 Gossypium hirsutum HOM05D004115 ORTHO05D005004 1.7e-48 196.8 163 69.3
Sed0026728 Sechium edule HOM05D004115 ORTHO05D005004 1.7e-48 196.8 162 67.9
Rhsim05G0043600 Rhododendron simsii HOM05D004115 ORTHO05D005004 2.2e-48 196.4 167 68.9
Gohir.A06G064700 Gossypium hirsutum HOM05D004115 ORTHO05D005004 2.9e-48 196.1 163 69.3
Ciclev10007553m.g Citrus clementina HOM05D004115 ORTHO05D005004 3.8e-48 195.7 225 56.9
Sed0004305 Sechium edule HOM05D004115 ORTHO05D005004 3.8e-48 195.7 162 67.9
ClCG06G008850 Citrullus lanatus HOM05D004115 ORTHO05D005004 4.9e-48 195.3 162 67.9
COL.COLO4_34806 Corchorus olitorius HOM05D004115 ORTHO05D005004 6.4e-48 194.9 164 67.1
CsaV3_1G021840 Cucumis sativus L. HOM05D004115 ORTHO05D005004 6.4e-48 194.9 162 67.9
Nitab4.5_0000823g0030 Nicotiana tabacum HOM05D004115 ORTHO05D005004 6.4e-48 194.9 212 56.6
Nitab4.5_0002431g0020 Nicotiana tabacum HOM05D004115 ORTHO05D005004 6.4e-48 194.9 168 65.5
PGSC0003DMG400003138 Solanum tuberosum HOM05D004115 ORTHO05D005004 6.4e-48 194.9 212 57.1
Peaxi162Scf00231g00054 Petunia axillaris HOM05D004115 ORTHO05D005004 8.4e-48 194.5 212 56.6
Migut.K00492 Erythranthe guttata HOM05D004115 ORTHO05D005004 1.1e-47 194.1 160 68.1
Nn3g18135 Nelumbo nucifera HOM05D004115 ORTHO05D005004 1.1e-47 194.1 164 66.5
MELO3C024701.2 Cucumis melo HOM05D004115 ORTHO05D005004 1.4e-47 193.7 162 67.3
MD02G1057500 Malus domestica HOM05D004115 ORTHO05D005004 1.4e-47 193.7 163 68.7
vmacro10876 Vaccinium macrocarpon HOM05D004115 ORTHO05D005004 1.4e-47 193.7 161 68.9
Gohir.D13G201700 Gossypium hirsutum HOM05D004115 ORTHO05D005004 1.9e-47 193.4 163 68.1
Gorai.010G073800 Gossypium raimondii HOM05D004115 ORTHO05D005004 1.9e-47 193.4 163 68.7
Gorai.013G230500 Gossypium raimondii HOM05D004115 ORTHO05D005004 1.9e-47 193.4 229 53.7
TWI34G1278 Tripterygium wilfordii HOM05D004115 ORTHO05D005004 1.9e-47 193.4 163 68.1
Hma1.2p1_0945F.1_g240070 Hydrangea macrophylla HOM05D004115 ORTHO05D005004 2.4e-47 193.0 165 65.5
HanXRQChr10g0318741 Helianthus annuus HOM05D004115 ORTHO05D005004 4.2e-47 192.2 165 66.1
Manes.03G024100 Manihot esculenta HOM05D004115 ORTHO05D005004 4.2e-47 192.2 215 56.3
TAR383G0462 Trochodendron aralioides HOM05D004115 ORTHO05D005004 5.4e-47 191.8 224 55.4
Hma1.2p1_1151F.1_g261850 Hydrangea macrophylla HOM05D004115 ORTHO05D005004 7.1e-47 191.4 165 64.8
Potri.018G083900 Populus trichocarpa HOM05D004115 ORTHO05D005004 7.1e-47 191.4 172 66.9
PGR142G2866 Punica granatum HOM05D004115 ORTHO05D005004 7.1e-47 191.4 163 66.3
Solyc07g018360.3 Solanum lycopersicum HOM05D004115 ORTHO05D005004 1.2e-46 190.7 212 56.1
Sopen07g007510 Solanum pennellii HOM05D004115 ORTHO05D005004 1.2e-46 190.7 212 56.1
CAN.G258.4 Capsicum annuum HOM05D004115 ORTHO05D005004 1.6e-46 190.3 168 64.3
Cpa.g.sc3091.1 Carica papaya HOM05D004115 ORTHO05D005004 1.6e-46 190.3 163 66.3
Ah.14g082400 Amaranthus hybridus HOM05D004115 ORTHO05D005004 2.1e-46 189.9 163 66.3
CiPaw.04G161500 Carya illinoinensis HOM05D004115 ORTHO05D005004 2.1e-46 189.9 230 52.6
MBI01_g38799_MAGBIO Magnolia biondii HOM05D004115 ORTHO05D005004 2.1e-46 189.9 160 67.5
QL02p044736 Quercus lobata HOM05D004115 ORTHO05D005004 2.1e-46 189.9 164 67.1
Ciclev10010581m.g Citrus clementina HOM05D004115 ORTHO05D005004 2.7e-46 189.5 228 54.4
SGA_v2.0_scaffold30G12384 Striga asiatica HOM05D004115 ORTHO05D005004 2.7e-46 189.5 164 64.0
unitig_37.g12650 Utricularia gibba HOM05D004115 ORTHO05D005004 3.5e-46 189.1 165 64.8
CSS0012218 Camellia sinensis var. sinensis HOM05D004115 ORTHO05D005004 4.6e-46 188.7 219 56.6
AUR62021454 Chenopodium quinoa HOM05D004115 ORTHO05D005004 4.6e-46 188.7 163 63.8
Sabra18G0072200 Salix brachista HOM05D004115 ORTHO05D005004 4.6e-46 188.7 215 55.8
MSTRG.19573 Avicennia marina HOM05D004115 ORTHO05D005004 6.0e-46 188.3 161 65.8
PSO210G7660 Papaver somniferum HOM05D004115 ORTHO05D005004 6.0e-46 188.3 214 54.7
EL10Ac8g18429 Beta vulgaris HOM05D004115 ORTHO05D005004 7.9e-46 188.0 163 65.0
AUR62010941 Chenopodium quinoa HOM05D004115 ORTHO05D005004 7.9e-46 188.0 163 63.8
PSO210G1769 Papaver somniferum HOM05D004115 ORTHO05D005004 7.9e-46 188.0 214 54.2
Eucgr.C01279 Eucalyptus grandis HOM05D004115 ORTHO05D005004 1.0e-45 187.6 167 65.9
Sc18g0001370 Simmondsia chinensis HOM05D004115 ORTHO05D005004 1.0e-45 187.6 163 63.8
Cc06_g10060 Coffea canephora HOM05D004115 ORTHO05D005004 1.3e-45 187.2 165 66.7
TWI63G0403 Tripterygium wilfordii HOM05D004115 ORTHO05D005004 1.3e-45 187.2 163 66.3
Lsat_1_v5_gn_5_147760 Lactuca sativa HOM05D004115 ORTHO05D005004 1.8e-45 186.8 165 64.8
DCAR_012058 Daucus carota HOM05D004115 ORTHO05D005004 2.3e-45 186.4 166 65.1
Oeu060218.1 Olea europaea HOM05D004115 ORTHO05D005004 3.0e-45 186.0 165 64.8
Hund09224 Selenicereus undatus HOM05D004115 ORTHO05D005004 3.0e-45 186.0 160 64.4
HPP92_011254 Vanilla planifolia HOM05D004115 ORTHO05D005004 3.9e-45 185.7 160 65.0
SalBow6G6960 Salvia bowleyana HOM05D004115 ORTHO05D005004 5.1e-45 185.3 224 52.7
THA.LOC104814561 Tarenaya hassleriana HOM05D004115 ORTHO05D005004 1.1e-44 184.1 160 67.5
C01p10470 Brassica napus HOM05D004115 ORTHO05D005004 1.5e-44 183.7 160 66.2
BolC1t01006H Brassica oleracea HOM05D004115 ORTHO05D005004 1.5e-44 183.7 160 66.2
BcaC09g51686 Brassica carinata HOM05D004115 ORTHO05D005004 1.9e-44 183.3 160 66.2
Thhalv10024316m.g Eutrema salsugineum HOM05D004115 ORTHO05D005004 1.9e-44 183.3 160 66.2
Carub.0007s1153 Capsella rubella HOM05D004115 ORTHO05D005004 4.3e-44 182.2 160 66.9
ECA234G3475 Erigeron canadensis HOM05D004115 ORTHO05D005004 4.3e-44 182.2 159 64.8
CDE02G3981 Ceratophyllum demersum HOM05D004115 ORTHO05D005004 7.4e-44 181.4 165 62.4
Lj7A657T48 Lonicera japonica HOM05D004115 ORTHO05D005004 9.6e-44 181.0 215 53.5
THA.LOC104804019 Tarenaya hassleriana HOM05D004115 ORTHO05D005004 1.3e-43 180.6 160 65.0
CDE08G1325 Ceratophyllum demersum HOM05D004115 ORTHO05D005004 3.6e-43 179.1 165 61.2
Os12g0541500 Oryza sativa ssp. japonica HOM05D004115 ORTHO05D005004 6.9e-42 174.9 160 63.8
ATR0315G017 Amborella trichopoda HOM05D004115 ORTHO05D005004 2.0e-41 173.3 160 59.4
Zm00001eb110810 Zea mays HOM05D004115 ORTHO05D005004 3.4e-41 172.6 160 60.6
AL7G23380 Arabidopsis lyrata HOM05D004115 ORTHO05D005004 7.6e-41 171.4 166 59.6
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 7.6e-41 171.4 152 65.8
CARHR236800 Cardamine hirsuta HOM05D004115 ORTHO05D005004 7.6e-41 171.4 166 59.6
Sp7g27000 Schrenkiella parvula HOM05D004115 ORTHO05D005004 1.3e-40 170.6 166 59.0
AT4G29060 Arabidopsis thaliana HOM05D004115 ORTHO05D005004 2.2e-40 169.9 166 58.4
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 2.2e-40 169.9 152 65.1
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 2.9e-40 169.5 151 65.6
Aa31LG2G21550 Aethionema arabicum HOM05D004115 ORTHO05D005004 3.8e-40 169.1 172 61.0
Mapoly0191s0001 Marchantia polymorpha HOM05D004115 ORTHO05D005004 9.3e-39 164.5 165 55.8
Pp3c3_11840 Physcomitrium patens HOM05D004115 ORTHO05D005004 2.1e-38 163.3 166 54.8
Prupe.7G225300 Prunus persica HOM05D004115 ORTHO05D005004 2.7e-38 162.9 166 54.8
SEGI_05158 Sequoiadendron giganteum HOM05D004115 ORTHO05D005004 1.0e-37 161.0 166 55.4
GSVIVG01015347001 Vitis vinifera HOM05D004115 ORTHO05D005004 1.8e-37 160.2 166 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5663 Anthoceros agrestis HOM05D004115 ORTHO05D005004 2.3e-37 159.8 166 55.4
Pp3c13_21470 Physcomitrium patens HOM05D004115 ORTHO05D005004 3.9e-37 159.1 166 53.6
Prupe.7G225400 Prunus persica HOM05D004115 ORTHO05D005004 7.4e-36 154.8 111 78.4
SMO364G0950 Selaginella moellendorffii HOM05D004115 ORTHO05D005004 3.7e-35 152.5 166 52.4
Medtr6g084360 Medicago truncatula HOM05D000005 ORTHO05D000012 9.0e-34 147.9 151 62.3
CBR_g47124 Chara braunii HOM05D004115 ORTHO05D005004 2.9e-32 142.9 164 47.0
QL11p051993 Quercus lobata HOM05D004115 ORTHO05D005004 7.9e-30 134.8 128 59.4
Medtr6g087300 Medicago truncatula HOM05D004115 ORTHO05D005004 1.8e-29 133.7 172 55.8
Medtr6g088240 Medicago truncatula HOM05D004115 ORTHO05D005004 3.0e-29 132.9 94 80.9
MCO09G542 Micromonas commoda HOM05D004115 ORTHO05D005004 3.9e-29 132.5 166 48.2
MCO11G836 Micromonas commoda HOM05D004115 ORTHO05D005004 3.9e-29 132.5 166 45.8
Cre12.g519180 Chlamydomonas reinhardtii HOM05D004115 ORTHO05D005004 4.5e-25 119.0 167 43.1
Medtr6g027070 Medicago truncatula HOM05D004115 ORTHO05D005004 8.5e-16 88.2 100 53.0
Zm00001eb356890 Zea mays HOM05D004115 ORTHO05D005004 9.4e-15 84.7 76 55.3
Oeu011770.1 Olea europaea HOM05D004115 ORTHO05D005004 2.8e-11 73.2 114 44.7
Medtr6g087200 Medicago truncatula HOM05D000005 ORTHO05D000012 3.4e-09 66.2 73 50.7
Hund26231 Selenicereus undatus HOM05D004115 ORTHO05D009493 3.8e-08 62.8 74 45.9
CBR_g24367 Chara braunii HOM05D006012 ORTHO05D007315 1.4e-07 60.8 98 33.7
Medtr6g066260 Medicago truncatula HOM05D004115 ORTHO05D005004 5.5e-07 58.9 80 41.2
SMO364G0746 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 1.2e-06 57.8 95 31.6
Aqoxy6G00639 Aquilegia oxysepala HOM05D006012 ORTHO05D007315 1.6e-06 57.4 101 32.7
Peaxi162Scf00000g06018 Petunia axillaris HOM05D006012 ORTHO05D007315 2.1e-06 57.0 95 36.8
Zm00001eb091120 Zea mays HOM05D004115 ORTHO05D005004 4.7e-06 55.8 66 43.9
Nn1g07641 Nelumbo nucifera HOM05D006012 ORTHO05D007315 6.1e-06 55.5 95 32.6
Nitab4.5_0000505g0060 Nicotiana tabacum HOM05D006012 ORTHO05D007315 6.1e-06 55.5 95 34.7
Nitab4.5_0000639g0250 Nicotiana tabacum HOM05D006012 ORTHO05D007315 6.1e-06 55.5 95 34.7
SMO364G0063 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 6.1e-06 55.5 95 30.5
AUR62036845 Chenopodium quinoa HOM05D006012 ORTHO05D007315 7.9e-06 55.1 98 34.7
Prupe.3G150500 Prunus persica HOM05D006012 ORTHO05D007315 7.9e-06 55.1 101 35.6
TAR629G0946 Trochodendron aralioides HOM05D006012 ORTHO05D007315 7.9e-06 55.1 101 33.7


User provided reference genes

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