Gene: Pp3c3_11840
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c3_11840
- Transcript Identifier Pp3c3_11840V3.1
- Gene Type Coding gene
- Location Chr03 : 8291578-8295762 : positive
Gene Family Information
- ID HOM05D004115
- #Genes/#Species 171/99
- Phylogenetic origin
- ID ORTHO05D005004
- #Genes/#Species 166/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- name Pp3c3_11840V3.1
- pacid 32942849
- alias Phpat.003G045200
- alias Phypa_129127
- alias Pp1s74_243V6
- uniprot A0A2K1KU50
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070125 | IBA | GOA Database | mitochondrial translational elongation | |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G29060 |
| GO:0006414 | IBA IEA | GOA Database | translational elongation | |
| GO:0006414 | IEA | InterPro | translational elongation | |
| GO:0006412 | IEA | GOA Database | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G29060 |
| GO:0003746 | IBA IEA | GOA Database | translation elongation factor activity | |
| GO:0003746 | IEA | InterPro | translation elongation factor activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT4G29060 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT4G29060 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT4G29060 |
| GO:0005759 | IBA | GOA Database | mitochondrial matrix | |
| GO:0005739 | IEA | GOA Database | mitochondrion |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015940 | Ubiquitin-associated domain |
| IPR044146 | Tex, S1 domain |
| IPR001816 | Translation elongation factor EFTs/EF1B |
| IPR036402 | Elongation factor Ts, dimerisation domain superfamily |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR014039 | Translation elongation factor EFTs/EF1B, dimerisation |
| IPR009060 | UBA-like superfamily |
| IPR022967 | RNA-binding domain, S1 |
| IPR003029 | S1 domain |
| Mapman id | Description |
|---|---|
| 17.7.4.2 | Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-Ts) |