Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g030875 Medicago truncatula HOM05D000924 ORTHO05D001209 1.3e-88 329.7 163 100.0
Medtr2g031250 Medicago truncatula HOM05D000924 ORTHO05D001209 9.0e-79 297.0 148 98.6
Psat1g002360 Pisum sativum HOM05D000924 ORTHO05D001209 2.1e-19 99.8 116 50.0
Manes.18G005100 Manihot esculenta HOM05D000924 ORTHO05D001209 8.0e-19 97.8 101 51.5
Actinidia17090 Actinidia chinensis HOM05D000924 ORTHO05D001209 1.4e-18 97.1 142 43.0
ClCG05G013070 Citrullus lanatus HOM05D000924 ORTHO05D001209 1.8e-18 96.7 116 48.3
Dinv10292 Davidia involucrata HOM05D000924 ORTHO05D001209 1.8e-18 96.7 116 45.7
GSVIVG01010769001 Vitis vinifera HOM05D000924 ORTHO05D001209 1.8e-18 96.7 136 44.1
CSS0036316 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 3.1e-18 95.9 116 44.8
Gohir.A10G187300 Gossypium hirsutum HOM05D000924 ORTHO05D001209 3.1e-18 95.9 115 48.7
MSTRG.1010 Avicennia marina HOM05D000924 ORTHO05D001209 4.0e-18 95.5 109 46.8
Lj5A314T76 Lonicera japonica HOM05D000924 ORTHO05D001209 4.0e-18 95.5 101 50.5
Medtr2g064810 Medicago truncatula HOM05D000924 ORTHO05D001209 5.2e-18 95.1 93 52.7
Aa31LG7G5140 Aethionema arabicum HOM05D000924 ORTHO05D001209 6.8e-18 94.7 124 45.2
CAN.G1095.6 Capsicum annuum HOM05D000924 ORTHO05D001209 6.8e-18 94.7 117 43.6
Eucgr.F01825 Eucalyptus grandis HOM05D000924 ORTHO05D001209 6.8e-18 94.7 115 47.8
Gohir.D10G194400 Gossypium hirsutum HOM05D000924 ORTHO05D001209 6.8e-18 94.7 101 52.5
Gorai.011G217300 Gossypium raimondii HOM05D000924 ORTHO05D001209 6.8e-18 94.7 101 52.5
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 6.8e-18 94.7 117 43.6
Lj5C314G2 Lonicera japonica HOM05D000924 ORTHO05D001209 8.9e-18 94.4 101 49.5
Thecc.10G149400 Theobroma cacao HOM05D000924 ORTHO05D001209 1.2e-17 94.0 109 49.5
Cfa014157 Carpinus fangiana HOM05D000924 ORTHO05D001209 1.5e-17 93.6 101 51.5
Haze_22879 Corylus avellana HOM05D000924 ORTHO05D001209 1.5e-17 93.6 101 51.5
Duzib128G1905 Durio zibethinus HOM05D000924 ORTHO05D001209 1.5e-17 93.6 115 47.8
PGSC0003DMG400030366 Solanum tuberosum HOM05D000924 ORTHO05D001209 1.5e-17 93.6 108 48.1
Ca_03699_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 2.0e-17 93.2 112 47.3
COL.COLO4_20702 Corchorus olitorius HOM05D000924 ORTHO05D001209 2.0e-17 93.2 115 47.0
Cpa.g.sc36.108 Carica papaya HOM05D000924 ORTHO05D001209 2.6e-17 92.8 109 46.8
CDE06G2318 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 2.6e-17 92.8 150 38.7
Dinv32321 Davidia involucrata HOM05D000924 ORTHO05D001209 2.6e-17 92.8 109 45.9
Glyma.08G173500 Glycine max HOM05D000924 ORTHO05D001209 2.6e-17 92.8 116 46.6
Prupe.6G358100 Prunus persica HOM05D000924 ORTHO05D001209 2.6e-17 92.8 117 46.2
Solyc06g082100.4 Solanum lycopersicum HOM05D000924 ORTHO05D001209 2.6e-17 92.8 109 47.7
CiPaw.07G131100 Carya illinoinensis HOM05D000924 ORTHO05D001209 3.4e-17 92.4 101 50.5
Os02g0106966 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 3.4e-17 92.4 101 47.5
Sabra15G0116500 Salix brachista HOM05D000924 ORTHO05D001209 3.4e-17 92.4 109 46.8
SGA_v2.0_scaffold161G37860 Striga asiatica HOM05D000924 ORTHO05D001209 3.4e-17 92.4 114 44.7
Nitab4.5_0008569g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 4.4e-17 92.0 108 47.2
Sopen06g033490 Solanum pennellii HOM05D000924 ORTHO05D001209 4.4e-17 92.0 103 49.5
arahy.Tifrunner.gnm1.ann1.1JT8J9 Arachis hypogaea HOM05D000924 ORTHO05D001209 5.8e-17 91.7 116 47.4
arahy.Tifrunner.gnm1.ann1.JY4JA5 Arachis hypogaea HOM05D000924 ORTHO05D001209 5.8e-17 91.7 116 47.4
ClCG05G006710 Citrullus lanatus HOM05D000924 ORTHO05D001209 5.8e-17 91.7 134 43.3
ECA246G0163 Erigeron canadensis HOM05D000924 ORTHO05D001209 5.8e-17 91.7 101 49.5
arahy.Tifrunner.gnm1.ann1.L2QDU1 Arachis hypogaea HOM05D000924 ORTHO05D001209 7.5e-17 91.3 116 46.6
Ciclev10010890m.g Citrus clementina HOM05D000924 ORTHO05D001209 7.5e-17 91.3 96 52.1
MELO3C006732.2 Cucumis melo HOM05D000924 ORTHO05D001209 7.5e-17 91.3 136 42.6
Thhalv10006525m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 7.5e-17 91.3 101 48.5
Hma1.2p1_0914F.1_g236150 Hydrangea macrophylla HOM05D000924 ORTHO05D001209 7.5e-17 91.3 115 45.2
Peaxi162Scf00064g01426 Petunia axillaris HOM05D000924 ORTHO05D001209 7.5e-17 91.3 117 44.4
TWI14G0143 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 7.5e-17 91.3 117 44.4
VMungo1080G0748 Vigna mungo HOM05D000924 ORTHO05D001209 7.5e-17 91.3 116 44.8
CANSAT80G1721 Cannabis sativa HOM05D000924 ORTHO05D001209 9.8e-17 90.9 109 46.8
CsaV3_3G015340 Cucumis sativus L. HOM05D000924 ORTHO05D001209 9.8e-17 90.9 136 42.6
HanXRQChr17g0533721 Helianthus annuus HOM05D000924 ORTHO05D001209 9.8e-17 90.9 96 52.1
Nitab4.5_0005694g0030 Nicotiana tabacum HOM05D000924 ORTHO05D001209 9.8e-17 90.9 108 46.3
Phvul.005G055300 Phaseolus vulgaris HOM05D000924 ORTHO05D001209 9.8e-17 90.9 116 43.1
Migut.C00343 Erythranthe guttata HOM05D000924 ORTHO05D001209 1.7e-16 90.1 114 43.0
Glyma.15G253800 Glycine max HOM05D000924 ORTHO05D001209 1.7e-16 90.1 116 45.7
Lsat_1_v5_gn_3_7501 Lactuca sativa HOM05D000924 ORTHO05D001209 1.7e-16 90.1 112 45.5
MBI15_g36602_MAGBIO Magnolia biondii HOM05D000924 ORTHO05D001209 2.9e-16 89.4 112 44.6
Potri.012G097300 Populus trichocarpa HOM05D000924 ORTHO05D001209 2.9e-16 89.4 101 47.5
Potri.015G095500 Populus trichocarpa HOM05D000924 ORTHO05D001209 2.9e-16 89.4 109 44.0
Ciclev10004124m.g Citrus clementina HOM05D000924 ORTHO05D001209 3.7e-16 89.0 90 51.1
COL.COLO4_18725 Corchorus olitorius HOM05D000924 ORTHO05D001209 3.7e-16 89.0 97 49.5
MD04G1240400 Malus domestica HOM05D000924 ORTHO05D001209 3.7e-16 89.0 117 43.6
QL10p013857 Quercus lobata HOM05D000924 ORTHO05D001209 3.7e-16 89.0 100 47.0
CARHR021420 Cardamine hirsuta HOM05D000924 ORTHO05D001209 4.9e-16 88.6 148 38.5
Haze_17095 Corylus avellana HOM05D000924 ORTHO05D001209 4.9e-16 88.6 101 46.5
MD12G1257300 Malus domestica HOM05D000924 ORTHO05D001209 4.9e-16 88.6 117 43.6
AL1G33990 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 6.4e-16 88.2 114 43.9
CDE07G1660 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 6.4e-16 88.2 117 41.0
QL04p003238 Quercus lobata HOM05D000924 ORTHO05D001209 6.4e-16 88.2 93 51.6
SHI31129 Sapria himalayana HOM05D000924 ORTHO05D001209 6.4e-16 88.2 103 45.6
Sed0004818 Sechium edule HOM05D000924 ORTHO05D001209 8.3e-16 87.8 101 48.5
TPR.G10336 Trifolium pratense HOM05D000924 ORTHO05D001209 8.3e-16 87.8 112 46.4
TPR.G25887 Trifolium pratense HOM05D000924 ORTHO05D001209 8.3e-16 87.8 101 49.5
ClCG11G018370 Citrullus lanatus HOM05D000924 ORTHO05D001209 1.1e-15 87.4 101 46.5
Os03g0743800 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 1.1e-15 87.4 119 42.0
FvH4_5g21940 Fragaria vesca HOM05D000924 ORTHO05D001209 1.4e-15 87.0 117 43.6
FAN08G2720 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.4e-15 87.0 117 43.6
FAN18G2116 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.4e-15 87.0 117 43.6
Lsat_1_v5_gn_3_7441 Lactuca sativa HOM05D000924 ORTHO05D001209 1.4e-15 87.0 112 44.6
RcHm_v2.0_Chr7g0209461 Rosa chinensis HOM05D000924 ORTHO05D001209 1.4e-15 87.0 117 43.6
Zm00001eb328850 Zea mays HOM05D000924 ORTHO05D001209 1.4e-15 87.0 122 40.2
FAN13G1554 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.9e-15 86.7 117 43.6
Nitab4.5_0000110g0580 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.9e-15 86.7 99 48.5
PGR083G1659 Punica granatum HOM05D000924 ORTHO05D001209 1.9e-15 86.7 100 48.0
Sc15g0004020 Simmondsia chinensis HOM05D000924 ORTHO05D001209 1.9e-15 86.7 119 42.0
Cc02_g28440 Coffea canephora HOM05D000924 ORTHO05D001209 3.2e-15 85.9 112 43.8
Lj3g0017691 Lotus japonicus HOM05D000924 ORTHO05D001209 3.2e-15 85.9 98 46.9
Medtr2g064740 Medicago truncatula HOM05D000924 ORTHO05D001209 3.2e-15 85.9 101 46.5
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 3.2e-15 85.9 101 44.6
Aa31LG6G12910 Aethionema arabicum HOM05D000924 ORTHO05D001209 4.1e-15 85.5 98 46.9
Rhsim06G0001600 Rhododendron simsii HOM05D000924 ORTHO05D001209 4.1e-15 85.5 101 45.5
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 4.1e-15 85.5 109 44.0
DCAR_003081 Daucus carota HOM05D000924 ORTHO05D001209 5.4e-15 85.1 101 44.6
Carub.0001s2043 Capsella rubella HOM05D000924 ORTHO05D001209 7.0e-15 84.7 114 43.0
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 7.0e-15 84.7 104 48.1
EL10Ac2g02545 Beta vulgaris HOM05D000924 ORTHO05D001209 9.2e-15 84.3 101 44.6
CANSAT78G0159 Cannabis sativa HOM05D000924 ORTHO05D001209 9.2e-15 84.3 89 49.4
AT1G20960 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 3.5e-14 82.4 114 41.2
A07p15350 Brassica napus HOM05D000924 ORTHO05D001209 3.5e-14 82.4 117 43.6
BraA07t29275Z Brassica rapa HOM05D000924 ORTHO05D001209 3.5e-14 82.4 117 43.6
TAR369G0929 Trochodendron aralioides HOM05D000924 ORTHO05D001209 3.5e-14 82.4 103 47.6
ATR0605G032 Amborella trichopoda HOM05D000924 ORTHO05D001209 4.6e-14 82.0 101 44.6
BcaC06g34852 Brassica carinata HOM05D000924 ORTHO05D001209 7.8e-14 81.3 117 42.7
C07p22650 Brassica napus HOM05D000924 ORTHO05D001209 7.8e-14 81.3 117 42.7
BolC7t42794H Brassica oleracea HOM05D000924 ORTHO05D001209 7.8e-14 81.3 117 42.7
A02p10320 Brassica napus HOM05D000924 ORTHO05D001209 1.0e-13 80.9 117 41.0
C02p17050 Brassica napus HOM05D000924 ORTHO05D001209 1.0e-13 80.9 117 41.0
BolC2t07803H Brassica oleracea HOM05D000924 ORTHO05D001209 1.0e-13 80.9 117 41.0
BraA02t06099Z Brassica rapa HOM05D000924 ORTHO05D001209 1.0e-13 80.9 117 41.0
THA.LOC104812019 Tarenaya hassleriana HOM05D000924 ORTHO05D001209 1.0e-13 80.9 112 41.1
BcaB03g14290 Brassica carinata HOM05D000924 ORTHO05D001209 1.3e-13 80.5 117 40.2
Migut.N01909 Erythranthe guttata HOM05D000924 ORTHO05D001209 1.3e-13 80.5 102 44.1
Nn6g31594 Nelumbo nucifera HOM05D000924 ORTHO05D001209 1.3e-13 80.5 115 40.9
Lsat_1_v5_gn_4_157361 Lactuca sativa HOM05D000924 ORTHO05D001209 1.7e-13 80.1 101 42.6
BolC3t15183H Brassica oleracea HOM05D000924 ORTHO05D001209 2.3e-13 79.7 150 37.3
Nitab4.5_0002503g0090 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.3e-13 79.7 132 38.6
AT2G42270 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 3.0e-13 79.3 113 40.7
C03p28130 Brassica napus HOM05D000924 ORTHO05D001209 3.0e-13 79.3 150 37.3
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 3.0e-13 79.3 99 46.5
Nitab4.5_0003811g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 3.0e-13 79.3 140 39.3
TPR.G10348 Trifolium pratense HOM05D000924 ORTHO05D001209 3.9e-13 79.0 93 50.5
Ah.01g015930 Amaranthus hybridus HOM05D000924 ORTHO05D001209 6.6e-13 78.2 108 40.7
AL4G40630 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 1.1e-12 77.4 124 37.1
Nitab4.5_0026257g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.9e-12 76.6 102 43.1
RcHm_v2.0_Chr3g0448351 Rosa chinensis HOM05D000924 ORTHO05D001209 1.9e-12 76.6 114 39.5
Medtr4g011450 Medicago truncatula HOM05D000924 ORTHO05D001209 2.5e-12 76.3 96 42.7
Carub.0004s2461 Capsella rubella HOM05D000924 ORTHO05D001209 3.3e-12 75.9 101 42.6
FAN05G4579 Fragaria x ananassa HOM05D000924 ORTHO05D001209 3.3e-12 75.9 105 41.0
BcaC01g05308 Brassica carinata HOM05D000924 ORTHO05D001209 4.3e-12 75.5 116 38.8
HanXRQChr12g0359471 Helianthus annuus HOM05D000924 ORTHO05D001209 4.3e-12 75.5 109 42.2
Nitab4.5_0007467g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 4.3e-12 75.5 93 47.3
FAN14G3354 Fragaria x ananassa HOM05D000924 ORTHO05D001209 9.5e-12 74.3 104 41.3
vmacro14714 Vaccinium macrocarpon HOM05D000924 ORTHO05D001209 9.5e-12 74.3 93 45.2
FAN09G2563 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.2e-11 73.9 105 40.0
Aqoxy3G02568 Aquilegia oxysepala HOM05D000924 ORTHO05D001209 1.6e-11 73.6 148 35.8
CSS0020846 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 1.6e-11 73.6 91 44.0
Cc05_g03360 Coffea canephora HOM05D000924 ORTHO05D001209 2.8e-11 72.8 90 42.2
FvH4_6g47191 Fragaria vesca HOM05D000924 ORTHO05D001209 2.8e-11 72.8 104 40.4
AUR62032373 Chenopodium quinoa HOM05D000924 ORTHO05D001209 3.6e-11 72.4 101 39.6
AUR62024846 Chenopodium quinoa HOM05D000924 ORTHO05D001209 4.7e-11 72.0 101 39.6
CSS0008681 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 6.2e-11 71.6 88 44.3
AL5G18660 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 8.0e-11 71.2 107 42.1
BraA08t33566Z Brassica rapa HOM05D000924 ORTHO05D001209 1.1e-10 70.9 117 41.0
PSO063G7524 Papaver somniferum HOM05D000924 ORTHO05D001209 1.1e-10 70.9 98 40.8
PSO782G5199 Papaver somniferum HOM05D000924 ORTHO05D001209 1.1e-10 70.9 98 40.8
BcaC03g15896 Brassica carinata HOM05D000924 ORTHO05D001209 2.3e-10 69.7 121 39.7
Thhalv10016123m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 2.3e-10 69.7 80 46.2
SMO347G0607 Selaginella moellendorffii HOM05D000924 ORTHO05D001209 2.3e-10 69.7 145 30.3
SEGI_03458 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 3.1e-10 69.3 101 37.6
BcaB03g11743 Brassica carinata HOM05D000924 ORTHO05D001209 4.0e-10 68.9 108 40.7
MD09G1063000 Malus domestica HOM05D000924 ORTHO05D001209 5.2e-10 68.6 87 44.8
SEGI_01233 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 8.9e-10 67.8 135 33.3
FAN09G1765 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.5e-09 67.0 98 37.8
A02p22840 Brassica napus HOM05D000924 ORTHO05D001209 2.0e-09 66.6 120 39.2
FvH4_6g00860 Fragaria vesca HOM05D000924 ORTHO05D001209 2.0e-09 66.6 93 39.8
FAN14G0455 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.0e-09 66.6 93 39.8
Mapoly0043s0081 Marchantia polymorpha HOM05D000924 ORTHO05D001209 2.0e-09 66.6 133 34.6
BolC2t09659H Brassica oleracea HOM05D000924 ORTHO05D001209 2.6e-09 66.2 121 38.8
Oeu060274.1 Olea europaea HOM05D000924 ORTHO05D001209 2.6e-09 66.2 83 41.0
FAN05G2437 Fragaria x ananassa HOM05D000924 ORTHO05D001209 3.4e-09 65.9 111 35.1
CARHR137320 Cardamine hirsuta HOM05D000924 ORTHO05D001209 4.4e-09 65.5 113 37.2
CBR_g70690 Chara braunii HOM05D000924 ORTHO05D001209 4.4e-09 65.5 105 33.3
Nitab4.5_0004954g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 4.4e-09 65.5 79 46.8
Nitab4.5_0004801g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 7.5e-09 64.7 80 45.0
Pp3c1_35880 Physcomitrium patens HOM05D000924 ORTHO05D001209 7.5e-09 64.7 107 34.6
BcaB05g25201 Brassica carinata HOM05D000924 ORTHO05D001209 3.7e-08 62.4 103 38.8
Nitab4.5_0001515g0080 Nicotiana tabacum HOM05D000924 ORTHO05D001209 8.3e-08 61.2 93 41.9
Aqoxy2G02810 Aquilegia oxysepala HOM05D000924 ORTHO05D001209 1.4e-07 60.5 89 37.1
TPR.G31014 Trifolium pratense HOM05D000924 ORTHO05D001209 5.4e-07 58.5 128 33.6
FAN13G2240 Fragaria x ananassa HOM05D000924 ORTHO05D001209 7.1e-07 58.2 105 35.2
MCO02G020 Micromonas commoda HOM05D000924 ORTHO05D001209 9.2e-07 57.8 84 34.5
CAN.G993.32 Capsicum annuum HOM05D000924 ORTHO05D001209 1.2e-06 57.4 87 39.1
PSO210G7467 Papaver somniferum HOM05D000924 ORTHO05D303468 7.8e-06 54.7 88 40.9


User provided reference genes

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