Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 0.0e+00 1117.8 577 100.0
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 3.3e-277 958.0 553 87.7
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 3.9e-270 934.5 552 86.6
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 4.4e-269 931.0 552 87.5
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 2.3e-249 865.5 543 80.8
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 4.0e-246 854.7 558 78.1
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 8.6e-241 837.0 548 78.6
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 2.5e-240 835.5 494 84.2
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 4.0e-238 828.2 489 84.3
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 1.4e-235 819.7 490 83.3
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 4.1e-235 818.1 498 82.1
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 3.9e-233 811.6 494 82.4
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 3.3e-224 781.9 508 75.8
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 3.3e-224 781.9 520 74.2
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 4.3e-224 781.6 497 77.5
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 5.6e-224 781.2 502 76.7
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.6e-224 781.2 498 76.3
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 2.1e-223 779.2 546 71.1
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 3.6e-223 778.5 502 76.9
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.6e-223 778.5 490 77.6
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 3.1e-222 775.4 499 77.2
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 6.8e-222 774.2 492 77.0
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 1.2e-221 773.5 522 74.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.1e-219 766.9 493 75.5
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 3.2e-219 765.4 519 74.2
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 7.1e-219 764.2 504 75.8
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 2.1e-218 762.7 494 75.5
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.7e-218 762.3 523 72.5
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 2.7e-218 762.3 530 71.1
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.0e-217 760.4 507 73.6
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.3e-217 759.2 493 74.6
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.9e-217 758.4 497 74.8
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.6e-217 757.7 507 73.6
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 6.6e-217 757.7 523 72.3
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.1e-216 756.9 509 73.9
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 1.5e-216 756.5 494 75.7
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.5e-216 756.5 505 74.7
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.9e-216 756.1 493 74.4
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.3e-216 755.4 493 74.6
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 4.3e-216 755.0 491 75.6
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 3.6e-215 751.9 502 74.1
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.4e-214 750.0 499 74.3
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.8e-214 749.6 519 72.4
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.8e-214 749.6 502 74.1
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.2e-214 748.0 497 74.6
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.8e-214 747.7 531 70.4
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 5.8e-213 744.6 542 69.2
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.3e-212 743.4 496 74.0
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.7e-212 743.0 491 75.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 2.2e-212 742.7 492 74.6
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.4e-211 739.2 502 72.5
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 7.1e-211 737.6 498 73.5
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 7.1e-211 737.6 494 74.5
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 9.2e-211 737.3 500 73.2
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 3.5e-210 735.3 482 75.1
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 3.5e-210 735.3 507 71.6
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.3e-209 733.4 514 72.2
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.5e-208 729.9 502 71.5
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 2.5e-208 729.2 491 72.1
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 5.6e-208 728.0 491 72.7
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 7.3e-208 727.6 502 71.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 7.3e-208 727.6 534 68.7
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.6e-207 726.5 498 71.1
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 4.7e-207 724.9 497 71.8
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.1e-206 723.8 498 70.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.8e-206 723.0 493 71.8
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.4e-206 722.6 508 70.7
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 4.0e-206 721.8 498 71.1
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 5.2e-206 721.5 493 71.6
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 6.9e-206 721.1 491 71.5
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-205 720.3 487 74.1
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.2e-205 720.3 493 71.6
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.2e-205 720.3 500 70.8
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.4e-205 718.4 501 70.3
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.8e-205 718.0 490 71.4
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 5.8e-205 718.0 492 72.0
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.3e-204 716.8 498 70.3
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.3e-204 716.8 494 71.1
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.7e-204 716.5 490 72.2
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 6.4e-204 714.5 489 72.2
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.2e-202 710.3 482 72.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.6e-202 709.9 493 70.8
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 2.3e-201 706.1 507 68.6
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 3.9e-201 705.3 493 70.8
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 6.6e-201 704.5 511 69.9
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 8.7e-201 704.1 491 71.7
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 1.6e-199 699.9 490 71.2
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 4.0e-198 695.3 488 70.9
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.3e-196 690.3 486 71.4
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 8.4e-196 687.6 561 65.6
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.4e-195 686.8 488 68.6
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.3e-193 680.2 473 71.0
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 3.3e-192 675.6 500 67.0
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 9.0e-190 667.5 546 63.2
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 6.4e-188 661.4 438 73.3
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 3.8e-180 635.6 617 55.1
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 5.5e-179 631.7 516 63.2
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.1e-174 617.5 463 67.2
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 3.1e-174 615.9 527 59.6
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 5.9e-173 611.7 391 75.2
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.9e-171 606.7 484 64.3
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.0e-164 584.3 536 56.7
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 4.2e-163 578.9 505 58.2
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.6e-149 533.9 488 56.6
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.3e-140 504.2 349 73.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.5e-131 474.2 411 58.6
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.0e-128 463.8 362 67.4
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 2.1e-109 400.6 562 43.6
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 5.2e-105 386.0 267 70.0
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 5.4e-102 375.9 259 70.7
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.3e-84 318.2 189 84.1
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.8e-76 291.2 287 55.4
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.0e-76 290.4 370 44.9
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.1e-73 280.4 460 41.1
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 4.5e-72 276.6 171 78.4
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.2e-61 241.9 157 75.8
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.9e-57 226.1 134 76.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 2.6e-56 224.2 160 68.8
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.6e-53 214.9 231 48.9
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 7.7e-48 196.1 131 76.3
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 7.2e-46 189.5 132 74.2
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.1e-43 182.2 121 69.4
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.3e-42 178.7 148 60.8
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.6e-37 160.6 156 52.6
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.8e-36 158.3 295 38.3
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.3e-34 152.1 172 49.4
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.8e-34 150.2 99 75.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.8e-34 150.2 99 75.8
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 4.8e-34 150.2 97 73.2
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.0e-31 142.5 198 42.9
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.2e-31 141.4 132 60.6
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 2.4e-25 121.3 143 47.6
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 6.8e-20 103.2 62 79.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 4.1e-17 94.0 140 42.1
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.0e-17 93.2 77 64.9
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.2e-14 83.2 63 71.4
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 4.7e-13 80.5 93 47.3
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 8.9e-12 76.3 202 29.7
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 2.2e-10 71.6 76 51.3
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 1.1e-09 69.3 62 56.5
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.9e-07 60.8 188 28.2
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 7.3e-06 56.6 110 31.8
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 7.3e-06 56.6 158 30.4


User provided reference genes

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