Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 6.6e-216 753.8 402 100.0
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 2.5e-183 645.6 402 86.1
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 3.9e-176 621.7 402 83.3
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 5.7e-159 564.7 392 76.8
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 5.4e-157 558.1 393 77.9
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 3.6e-153 545.4 375 78.7
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 4.7e-153 545.0 409 74.1
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 3.7e-150 535.4 384 76.6
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 1.2e-148 530.4 415 72.0
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.7e-142 510.0 389 73.0
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 8.3e-142 507.7 390 70.0
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 2.4e-141 506.1 402 69.2
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 1.0e-139 500.7 424 67.2
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.3e-139 499.6 402 69.2
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.3e-139 499.6 402 69.2
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 3.0e-139 499.2 399 67.9
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 1.9e-138 496.5 396 68.7
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.9e-138 496.5 402 68.9
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 4.3e-138 495.4 402 68.9
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 1.4e-136 490.3 405 66.4
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 2.9e-134 482.6 406 65.0
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 6.4e-134 481.5 402 67.4
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 1.9e-133 479.9 411 64.7
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 7.0e-133 478.0 388 68.8
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 9.2e-133 477.6 399 66.2
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 1.2e-132 477.2 382 68.8
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 1.6e-132 476.9 400 64.2
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 1.6e-132 476.9 418 63.4
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.3e-131 473.8 406 65.3
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 1.7e-131 473.4 376 68.4
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.3e-131 473.0 397 65.5
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 6.6e-131 471.5 389 65.8
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 6.6e-131 471.5 389 65.8
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 8.6e-131 471.1 411 65.9
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 1.1e-130 470.7 389 65.6
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.5e-130 470.3 403 65.0
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 1.5e-130 470.3 388 65.7
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 2.5e-130 469.5 399 65.9
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 2.5e-130 469.5 415 64.3
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 1.1e-128 464.2 402 64.2
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.1e-128 464.2 397 63.7
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 1.8e-128 463.4 414 65.0
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 2.3e-128 463.0 407 65.8
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 2.3e-128 463.0 394 66.5
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 6.8e-128 461.5 386 66.6
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 8.9e-128 461.1 413 63.4
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 2.0e-127 459.9 395 63.8
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 2.6e-127 459.5 400 63.8
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 5.8e-127 458.4 411 62.8
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 5.8e-127 458.4 411 62.8
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 7.5e-127 458.0 388 65.5
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 2.2e-126 456.4 395 65.6
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.4e-125 453.8 322 74.2
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 1.9e-125 453.4 379 66.2
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 3.2e-125 452.6 408 65.0
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 3.2e-125 452.6 409 62.1
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 5.4e-125 451.8 402 63.2
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 5.4e-125 451.8 422 59.7
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 1.6e-124 450.3 401 62.8
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 2.1e-124 449.9 401 63.1
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 3.9e-123 445.7 392 63.8
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.1e-122 444.1 398 63.8
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 1.9e-122 443.4 383 64.0
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 4.7e-121 438.7 377 65.8
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 6.2e-121 438.3 401 62.3
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 1.4e-120 437.2 404 59.9
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 1.8e-120 436.8 387 63.0
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 1.8e-120 436.8 389 62.5
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 3.1e-120 436.0 403 63.0
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 5.2e-120 435.3 322 71.7
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 1.2e-119 434.1 400 62.8
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 1.5e-119 433.7 416 60.8
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 3.4e-119 432.6 441 57.4
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 1.9e-117 426.8 378 65.9
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 2.4e-117 426.4 390 62.6
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 5.4e-117 425.2 246 90.2
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 1.6e-116 423.7 407 60.0
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 1.7e-115 420.2 284 74.6
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 1.9e-114 416.8 394 60.4
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 4.0e-112 409.1 291 75.3
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 4.4e-111 405.6 302 71.9
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 5.8e-111 405.2 302 68.9
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 9.9e-111 404.4 302 68.5
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 9.9e-111 404.4 322 65.2
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 8.4e-110 401.4 264 80.3
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 8.4e-110 401.4 297 72.4
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 1.1e-109 401.0 281 75.8
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 3.2e-109 399.4 299 70.9
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 5.4e-109 398.7 385 59.5
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 3.9e-107 392.5 298 70.5
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 1.9e-106 390.2 414 57.5
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 3.3e-106 389.4 392 56.6
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 4.0e-104 382.5 413 56.7
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 2.9e-102 376.3 408 55.9
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 9.3e-101 371.3 277 69.3
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.6e-97 360.5 417 50.1
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 1.4e-96 357.5 265 71.3
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 4.6e-92 342.4 287 62.0
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 1.1e-90 337.8 206 78.6
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 5.3e-88 328.9 261 67.4
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 2.9e-86 323.2 424 49.5
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 3.8e-86 322.8 403 50.6
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 6.5e-86 322.0 350 53.7
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 1.9e-85 320.5 247 68.0
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 2.5e-85 320.1 418 49.8
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.8e-80 303.9 314 55.7
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.7e-78 297.4 207 73.9
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 1.0e-67 261.5 158 79.7
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 5.7e-66 255.8 218 64.2
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 9.1e-64 248.4 266 51.5
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 3.8e-62 243.0 204 56.9
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.8e-57 226.1 285 50.9
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 9.1e-56 221.9 266 51.1
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 2.6e-50 203.8 157 76.4
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 3.7e-41 173.3 185 45.4
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.8e-40 171.0 324 34.3
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 1.8e-32 144.4 211 37.9
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.0e-30 138.7 159 55.3
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 3.6e-28 130.2 79 84.8
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 4.7e-12 76.6 168 31.5
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 1.5e-10 71.6 109 44.0
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 1.1e-08 65.5 139 41.0
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 3.9e-06 57.0 87 44.8
FAN21G1146 Fragaria x ananassa HOM05D006305 ORTHO05D208540 8.6e-06 55.8 48 64.6


User provided reference genes

Program Settings