Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 2.2e-140 502.3 257 100.0
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 1.5e-115 419.9 254 85.0
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 2.3e-113 412.5 258 84.1
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 2.3e-100 369.4 261 75.9
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 5.0e-100 368.2 261 75.1
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 1.5e-99 366.7 261 74.3
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 5.2e-97 358.2 260 75.4
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 3.0e-92 342.4 253 71.1
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 2.5e-91 339.3 250 71.6
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 8.9e-89 330.9 257 68.5
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 4.6e-85 318.5 256 66.8
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 3.0e-84 315.8 256 66.4
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 3.9e-84 315.5 254 68.1
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 6.6e-84 314.7 254 67.3
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 2.5e-83 312.8 258 66.7
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 5.6e-83 311.6 259 65.3
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 9.5e-83 310.8 256 66.4
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 1.6e-82 310.1 251 66.5
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 1.6e-82 310.1 251 66.5
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 2.1e-82 309.7 253 66.8
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 2.8e-82 309.3 245 66.5
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.1e-81 307.4 252 66.7
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 1.8e-81 306.6 256 62.1
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.8e-81 306.6 239 68.6
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 2.3e-81 306.2 251 66.1
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 8.9e-81 304.3 236 66.9
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 9.8e-80 300.8 251 64.1
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 1.3e-79 300.4 272 59.6
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 2.2e-79 299.7 260 64.2
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 2.2e-79 299.7 253 64.0
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 2.9e-79 299.3 251 63.7
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 4.9e-79 298.5 250 63.2
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 8.3e-79 297.7 219 68.9
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 8.3e-79 297.7 230 65.7
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 2.4e-78 296.2 234 66.2
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 3.2e-78 295.8 248 65.7
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 3.2e-78 295.8 252 64.3
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 3.2e-78 295.8 252 64.3
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 5.4e-78 295.0 240 65.0
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 9.2e-78 294.3 255 62.0
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 1.2e-77 293.9 251 63.3
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 1.6e-77 293.5 252 61.5
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 2.1e-77 293.1 252 61.9
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 2.7e-77 292.7 256 63.7
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 3.5e-77 292.4 248 62.9
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.6e-77 292.0 248 62.9
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 6.0e-77 291.6 247 62.3
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 7.8e-77 291.2 260 63.8
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 3.9e-76 288.9 258 59.3
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 6.6e-76 288.1 258 61.2
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 8.6e-76 287.7 261 59.0
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 1.1e-75 287.3 253 61.7
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 1.1e-75 287.3 248 62.5
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 1.5e-75 287.0 261 59.0
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 1.9e-75 286.6 285 56.5
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 1.6e-74 283.5 258 58.5
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 8.1e-74 281.2 224 64.7
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 1.1e-73 280.8 206 67.0
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 1.4e-73 280.4 252 58.7
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 1.8e-73 280.0 248 61.3
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 5.2e-73 278.5 252 58.7
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 2.0e-72 276.6 239 60.3
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 2.6e-72 276.2 210 64.3
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 3.4e-72 275.8 267 55.8
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 9.9e-72 274.2 229 64.2
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 1.7e-71 273.5 235 63.8
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 2.2e-71 273.1 248 62.1
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 2.9e-71 272.7 258 60.5
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.9e-71 271.9 274 57.3
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 6.4e-71 271.6 250 58.4
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 1.1e-70 270.8 245 62.0
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 1.4e-70 270.4 245 58.8
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 1.9e-70 270.0 253 58.1
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 2.4e-70 269.6 256 59.0
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 5.4e-70 268.5 247 58.3
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 5.4e-70 268.5 242 58.7
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 5.4e-70 268.5 306 52.0
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 9.2e-70 267.7 348 47.4
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 1.3e-68 263.8 247 56.3
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 1.3e-68 263.8 224 60.7
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 8.6e-68 261.2 229 59.0
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 1.9e-67 260.0 194 64.9
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 9.6e-67 257.7 251 57.0
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 5.2e-65 251.9 247 53.8
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 8.9e-65 251.1 195 63.1
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 8.9e-65 251.1 195 63.1
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 1.5e-64 250.4 235 56.6
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 1.5e-64 250.4 264 56.4
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 2.1e-61 240.0 263 51.0
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 8.7e-60 234.6 260 52.7
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 1.1e-59 234.2 278 50.7
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 3.3e-59 232.6 175 63.4
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 2.8e-58 229.6 286 50.7
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 6.2e-58 228.4 267 49.1
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 1.5e-56 223.8 205 59.0
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 1.5e-56 223.8 429 36.4
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 1.3e-55 220.7 247 49.4
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 3.2e-54 216.1 263 51.0
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 7.1e-46 188.3 134 64.2
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 2.4e-41 173.3 158 57.0
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 3.4e-40 169.5 261 44.4
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 1.7e-39 167.2 218 41.7
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 2.9e-39 166.4 94 83.0
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 2.2e-31 140.2 156 55.8
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 6.1e-29 132.1 225 34.7
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 6.1e-29 132.1 261 39.8
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 3.7e-26 122.9 97 57.7
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.6e-24 116.7 119 60.5
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 7.2e-22 108.6 132 47.0
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 3.6e-21 106.3 210 31.9
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 7.4e-19 98.6 105 55.2
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 2.8e-18 96.7 246 30.1
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 5.9e-16 89.0 116 51.7
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 5.0e-15 85.9 131 40.5
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 9.4e-14 81.6 95 43.2
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 1.2e-13 81.3 173 35.8
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 5.2e-12 75.9 86 52.3
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 5.2e-12 75.9 88 54.5
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 4.4e-11 72.8 85 51.8
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 2.2e-10 70.5 52 57.7
Pp3c10_9830 Physcomitrium patens HOM05D000160 ORTHO05D000496 5.9e-08 62.4 155 28.4
Pp3c13_7410 Physcomitrium patens HOM05D000160 ORTHO05D000496 6.5e-07 58.9 202 26.7


User provided reference genes

Program Settings