Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 0.0e+00 1355.5 703 100.0
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 0.0e+00 1114.0 705 82.7
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 0.0e+00 1107.0 719 81.8
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 0.0e+00 1104.4 719 81.6
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 2.1e-289 998.8 705 75.5
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.7e-283 979.2 708 74.4
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.1e-282 976.5 708 74.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 6.9e-277 957.2 707 72.0
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.2e-276 956.4 712 71.3
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 4.8e-270 934.5 707 70.7
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 7.2e-266 920.6 706 70.3
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.4e-256 889.8 707 67.8
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.4e-253 879.8 713 66.8
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 9.1e-253 877.1 713 66.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 6.2e-201 704.9 705 54.9
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 2.9e-198 696.0 705 55.6
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 6.4e-198 694.9 706 54.1
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 5.6e-194 681.8 706 54.2
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.2e-191 674.1 725 52.0
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.2e-189 666.0 706 54.8
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 2.7e-188 662.9 739 50.7
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 1.5e-186 657.1 714 53.1
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 2.9e-182 642.9 705 51.6
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.2e-181 639.4 707 52.5
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 8.1e-177 624.8 716 51.4
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.4e-176 623.2 706 51.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 5.3e-176 622.1 769 49.4
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.3e-174 617.5 711 50.4
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.2e-172 610.9 708 51.0
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 7.9e-172 608.2 721 51.6
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.1e-171 605.5 719 51.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.1e-171 605.5 706 50.6
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.5e-170 604.0 728 50.0
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-170 604.0 709 48.7
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 9.6e-170 601.3 716 50.6
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.3e-169 600.9 765 49.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 4.8e-169 599.0 733 49.0
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 6.3e-169 598.6 723 49.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 6.3e-169 598.6 752 48.8
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.1e-168 597.8 709 50.2
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.5e-167 594.0 695 49.1
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 2.0e-167 593.6 711 48.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.3e-166 590.9 736 49.5
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.7e-166 590.5 764 47.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 2.9e-166 589.7 711 49.4
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.4e-166 588.2 758 47.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.9e-165 587.0 721 49.7
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.5e-165 585.5 679 50.1
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 7.2e-165 585.1 711 49.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 9.3e-165 584.7 722 48.6
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.2e-164 584.3 732 48.5
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.0e-163 579.7 768 46.1
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.9e-163 579.3 798 46.4
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 6.7e-163 578.6 711 48.2
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 5.7e-162 575.5 738 46.9
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.3e-161 572.0 721 49.5
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.4e-160 570.9 715 49.5
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 2.4e-160 570.1 715 48.8
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 6.9e-160 568.5 706 47.6
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 4.5e-159 565.8 771 47.3
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.0e-158 564.7 710 47.0
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-158 564.7 714 49.3
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 3.2e-157 559.7 709 46.8
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 6.1e-156 555.4 724 47.0
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-155 554.7 709 47.7
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.0e-155 554.7 775 46.8
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 3.9e-155 552.7 765 46.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.7e-153 547.4 682 50.3
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 5.3e-152 542.3 710 45.6
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 9.1e-152 541.6 708 46.3
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 3.8e-150 536.2 712 48.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 6.7e-147 525.4 740 45.5
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-146 524.2 765 45.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 5.7e-146 522.3 765 45.2
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 8.2e-145 518.5 708 45.1
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 7.0e-144 515.4 736 44.7
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 9.1e-144 515.0 707 45.8
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.6e-143 514.2 734 44.3
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 7.7e-143 511.9 620 47.4
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 8.0e-140 501.9 723 42.9
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 5.7e-138 495.7 746 42.4
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.7e-137 494.2 769 43.0
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 4.8e-137 492.7 694 43.9
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.1e-136 491.5 764 42.9
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 5.9e-135 485.7 862 39.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.0e-134 485.0 657 46.3
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 5.0e-134 482.6 756 41.7
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 4.8e-129 466.1 716 43.7
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.0e-126 458.4 743 43.1
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.1e-125 454.9 721 41.7
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 4.9e-121 439.5 822 37.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.1e-120 438.3 699 42.2
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 7.7e-119 432.2 673 44.3
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.1e-117 428.3 854 36.8
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-116 424.9 853 36.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-116 424.5 744 41.3
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 2.8e-116 423.7 825 37.1
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.9e-115 418.7 710 40.4
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.0e-110 403.7 547 47.5
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 2.1e-108 397.5 511 47.6
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.0e-102 377.1 705 38.9
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.6e-102 375.9 828 35.6
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.7e-97 361.3 727 36.6
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.8e-83 314.7 721 35.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 6.4e-81 306.2 695 34.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.4e-80 304.3 724 33.8
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.0e-78 297.4 711 34.5
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.1e-71 274.6 627 35.4
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 3.5e-71 273.9 321 49.2
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.3e-70 271.2 713 33.8
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 4.3e-69 266.9 726 30.3
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-61 242.3 404 40.3
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 3.4e-58 230.7 886 27.2
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.1e-53 215.7 274 44.2
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.5e-53 215.3 198 54.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.2e-50 205.7 697 27.5
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.4e-50 204.1 317 42.6
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.3e-49 202.2 683 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.4e-43 181.4 697 25.4
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.1e-40 172.6 176 50.0
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.1e-40 172.6 176 50.0
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.3e-38 164.9 126 63.5
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.3e-36 159.1 307 34.2
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 1.8e-35 155.2 211 51.2
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 2.5e-32 144.8 137 55.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-29 136.0 210 38.6
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.3e-25 122.5 82 69.5
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 4.2e-24 117.5 255 35.3
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 7.5e-21 106.7 103 51.5
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.4e-19 101.7 89 58.4
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.7e-18 98.2 112 47.3
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.5e-16 92.4 175 39.4
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.2e-16 91.3 100 46.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.0e-06 59.7 54 57.4


User provided reference genes

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