Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040420 Medicago truncatula HOM05D001758 ORTHO05D259525 1.0e-34 149.4 70 100.0
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 2.7e-08 61.6 50 62.0
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 2.7e-08 61.6 29 100.0
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 4.7e-08 60.8 32 90.6
Medtr3g118335 Medicago truncatula HOM05D001758 ORTHO05D263324 4.7e-08 60.8 30 96.7
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 1.0e-07 59.7 50 60.0
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 2.3e-07 58.5 33 84.8
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 2.3e-07 58.5 55 60.0
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 2.3e-07 58.5 55 60.0
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 3.0e-07 58.2 40 77.5
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 5.2e-07 57.4 29 93.1
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Actinidia27373 Actinidia chinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
BcaNung04480 Brassica carinata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Cpa.g.sc180.12 Carica papaya HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-07 57.0 29 93.1
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
TAR381G1011 Trochodendron aralioides HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 6.7e-07 57.0 29 93.1
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
DCAR_005565 Daucus carota HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
MBI10_g39246_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 1.5e-06 55.8 29 89.7
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 2.0e-06 55.5 30 86.7
CAN.G458.13 Capsicum annuum HOM05D001758 ORTHO05D004430 3.3e-06 54.7 29 89.7
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 3.3e-06 54.7 29 89.7
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 4.4e-06 54.3 26 96.2
Gohir.A08G184050 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.7e-06 53.9 29 86.2
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.7e-06 53.9 29 86.2
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 5.7e-06 53.9 29 86.2
MBI09_g41018_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 7.5e-06 53.5 29 86.2
MBI09_g41596_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 7.5e-06 53.5 29 86.2


User provided reference genes

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