Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1699.5 851 100.0
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1696.8 851 99.9
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1670.6 851 97.8
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1662.9 851 97.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1605.5 851 94.0
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1571.6 849 92.3
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1570.8 849 92.2
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1569.3 849 91.9
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1564.3 849 92.2
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1558.9 849 91.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1552.7 851 90.2
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1550.8 851 90.1
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1493.4 844 87.1
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1488.8 851 85.5
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1479.5 843 85.4
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1479.2 851 85.0
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1476.1 851 84.7
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1461.0 852 84.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1459.1 849 84.3
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1456.0 851 84.1
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1455.3 852 84.3
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1451.4 844 84.7
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1449.9 851 83.4
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1445.3 851 84.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1439.5 855 82.8
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1436.0 869 81.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1433.7 856 83.2
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1431.8 851 83.9
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1427.9 860 80.8
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1424.8 852 82.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 851 84.0
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1414.1 844 82.7
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1406.3 860 79.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1401.7 855 80.9
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1400.6 860 79.7
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1397.9 860 79.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1397.1 852 80.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1394.0 853 81.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1393.3 853 81.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1392.1 851 80.7
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1389.4 853 79.6
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1388.6 851 79.8
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1387.9 854 81.0
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1387.5 851 81.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1387.1 917 76.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1385.9 916 77.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1384.8 874 79.2
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1384.4 931 75.8
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 919 74.5
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1373.6 851 80.0
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1372.5 853 80.2
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1370.1 848 78.8
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 848 79.6
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 900 75.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1367.8 857 79.2
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1367.1 919 74.0
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1364.0 853 78.5
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1362.1 864 78.4
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1358.6 851 79.0
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1358.2 849 79.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1358.2 851 79.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 857 78.6
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 866 78.5
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1345.1 844 79.0
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 854 78.2
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1337.4 847 77.7
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 851 77.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 881 76.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 847 77.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 863 75.9
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1314.3 848 76.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1311.6 768 84.5
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 865 75.6
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1306.6 949 70.1
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1302.0 865 74.8
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 865 75.0
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 865 75.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 865 75.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1299.6 865 75.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1299.6 865 75.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1299.6 865 75.1
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1298.5 865 75.0
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1297.0 865 74.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1293.9 794 80.0
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1291.9 872 74.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1253.0 848 73.3
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1252.7 848 71.7
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1246.9 864 70.7
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1239.9 733 82.3
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1156.0 848 70.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1141.7 847 68.4
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1106.7 858 69.3
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1096.3 850 62.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1086.6 1148 55.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1084.3 843 63.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1083.6 889 64.1
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.5e-297 1026.2 846 59.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-290 1003.0 860 65.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 4.3e-281 971.5 696 73.3
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 9.0e-279 963.8 631 75.6
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.4e-276 956.4 804 63.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.7e-261 906.4 736 66.7
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 9.1e-239 830.9 609 67.8
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.7e-224 782.3 685 62.6
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.4e-210 737.3 468 81.0
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 3.5e-206 722.6 433 84.3
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.9e-205 719.5 481 73.8
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.6e-188 662.1 610 58.7
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-185 653.7 342 96.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.4e-183 646.7 414 75.4
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.2e-178 629.0 369 86.7
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.1e-175 621.3 856 41.7
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 4.2e-159 566.2 865 39.2
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.0e-157 561.6 365 73.7
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 6.7e-149 532.3 440 65.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.2e-137 495.0 834 36.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 7.2e-119 432.6 602 45.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.1e-118 429.5 337 59.3
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 4.4e-116 423.3 1011 31.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 7.4e-116 422.5 377 62.6
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 9.4e-103 379.0 331 57.4
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.8e-93 345.9 269 61.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 8.6e-80 302.8 218 69.3
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 4.3e-79 300.4 165 87.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.3e-79 299.7 319 50.5
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.4e-74 285.4 245 57.1
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.0e-72 279.3 158 75.9
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-49 201.8 97 100.0
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-38 164.1 101 79.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-34 152.5 97 75.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-33 148.7 111 70.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 7.9e-33 146.7 95 75.8
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 3.3e-31 141.4 168 51.8
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-30 139.4 94 72.3
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-30 139.4 67 98.5
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-29 136.0 85 77.6
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-29 135.2 91 72.5
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-28 132.5 87 73.6
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-27 129.4 185 47.0
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-27 127.9 106 67.0
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.2e-26 124.8 125 59.2
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.5e-25 121.3 96 67.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.5e-25 121.3 125 52.8
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-24 119.4 113 57.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-24 118.2 68 80.9
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.9e-24 117.9 100 64.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-23 116.3 103 63.1
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-23 114.4 107 57.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.1e-21 109.8 64 78.1
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-20 105.1 96 60.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-19 100.9 115 50.4
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 4.6e-17 94.4 54 90.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-15 89.0 82 61.0
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 2.5e-15 88.6 52 78.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 7.4e-15 87.0 52 76.9
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.2e-12 79.7 49 81.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 7.7e-12 77.0 87 48.3
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 7.7e-12 77.0 87 48.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 3.8e-11 74.7 201 30.3
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 5.0e-11 74.3 79 53.2
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.5e-10 72.0 37 91.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 7.9e-09 67.0 85 49.4
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 2.2e-06 58.9 41 70.7


User provided reference genes

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