Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 5.8e-257 890.6 514 100.0
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 3.5e-100 369.8 273 66.3
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 1.0e-96 358.2 412 53.2
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 5.2e-96 355.9 373 52.8
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 5.2e-96 355.9 351 55.6
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 1.7e-94 350.9 217 77.0
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 2.2e-94 350.5 344 61.0
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 1.8e-93 347.4 356 59.6
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 1.8e-93 347.4 360 60.3
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 3.1e-93 346.7 347 56.5
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 4.1e-93 346.3 421 53.0
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 7.0e-93 345.5 351 53.6
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 9.1e-93 345.1 413 48.7
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 9.1e-93 345.1 358 56.7
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.6e-92 344.4 262 66.8
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 2.6e-92 343.6 426 46.9
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 4.5e-92 342.8 293 58.7
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 5.9e-92 342.4 422 50.2
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 5.9e-92 342.4 356 62.1
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 7.7e-92 342.0 431 46.4
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 7.7e-92 342.0 421 52.3
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 7.7e-92 342.0 421 55.1
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 1.0e-91 341.7 352 52.6
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 1.0e-91 341.7 281 65.8
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 1.3e-91 341.3 336 58.3
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 1.7e-91 340.9 421 50.8
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 2.2e-91 340.5 300 63.0
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 3.8e-91 339.7 304 64.1
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 3.8e-91 339.7 407 46.7
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 5.0e-91 339.3 305 57.4
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 6.5e-91 339.0 316 56.3
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 6.5e-91 339.0 316 56.3
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 6.5e-91 339.0 354 55.9
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 6.5e-91 339.0 425 49.6
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 6.5e-91 339.0 371 50.7
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 8.5e-91 338.6 346 61.3
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 8.5e-91 338.6 345 52.5
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 8.5e-91 338.6 283 65.7
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-90 338.2 316 56.0
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 1.1e-90 338.2 416 47.6
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 1.9e-90 337.4 355 51.8
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.9e-90 337.4 275 61.1
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 1.9e-90 337.4 350 53.7
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 1.9e-90 337.4 353 56.4
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 2.5e-90 337.0 307 63.8
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 2.5e-90 337.0 310 67.1
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 2.5e-90 337.0 410 47.3
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.2e-90 336.7 287 63.1
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 4.2e-90 336.3 365 54.2
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 4.2e-90 336.3 351 52.4
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 5.5e-90 335.9 363 51.2
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 5.5e-90 335.9 316 56.0
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 9.4e-90 335.1 361 54.0
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 9.4e-90 335.1 419 48.7
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.2e-89 334.7 399 46.9
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.6e-89 334.3 242 67.4
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 1.6e-89 334.3 363 58.1
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 1.6e-89 334.3 372 51.9
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 2.1e-89 334.0 336 53.6
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 2.1e-89 334.0 370 52.7
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 2.1e-89 334.0 424 49.8
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 2.7e-89 333.6 290 59.7
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 2.7e-89 333.6 364 59.3
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 4.7e-89 332.8 358 49.2
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 4.7e-89 332.8 375 54.9
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 6.1e-89 332.4 373 53.6
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 8.0e-89 332.0 262 62.2
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 8.0e-89 332.0 342 61.1
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 1.0e-88 331.6 358 49.2
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 1.0e-88 331.6 358 49.2
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 1.4e-88 331.3 361 58.4
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 1.8e-88 330.9 261 63.6
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 2.3e-88 330.5 219 69.9
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 4.0e-88 329.7 408 47.5
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 8.8e-88 328.6 224 70.5
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 8.8e-88 328.6 287 56.8
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 3.4e-87 326.6 362 51.7
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 3.4e-87 326.6 366 55.5
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 4.4e-87 326.2 362 51.9
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 4.4e-87 326.2 362 51.9
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 4.4e-87 326.2 462 44.6
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 9.8e-87 325.1 348 50.6
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 1.3e-86 324.7 342 61.1
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 2.8e-86 323.6 343 53.1
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 3.7e-86 323.2 381 54.9
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 4.1e-85 319.7 254 62.6
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 9.1e-85 318.5 253 62.8
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 3.5e-84 316.6 271 59.8
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 1.0e-83 315.1 257 60.7
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 1.0e-83 315.1 251 63.3
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 3.8e-83 313.2 272 66.2
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 3.8e-83 313.2 238 65.5
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 8.5e-83 312.0 247 66.0
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 9.4e-82 308.5 279 63.4
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 3.6e-81 306.6 303 54.5
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 1.3e-78 298.1 358 45.8
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 9.2e-77 292.0 341 52.5
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 2.0e-71 274.2 284 54.9
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 2.2e-70 270.8 245 60.4
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 4.7e-65 253.1 244 55.7
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 1.4e-64 251.5 367 48.2
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 5.8e-63 246.1 204 63.7
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 1.3e-62 245.0 239 54.0
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 6.4e-62 242.7 154 74.0
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.1e-61 240.0 259 51.4
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.6e-60 238.0 275 48.7
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 4.6e-60 236.5 155 73.5
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 7.3e-58 229.2 241 55.2
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 2.1e-49 201.1 428 38.3
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 6.8e-48 196.1 212 50.5
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 9.9e-47 192.2 187 49.2
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 1.9e-45 188.0 158 60.8
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.8e-40 171.4 199 42.2
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.1e-37 162.2 238 45.0
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.5e-31 141.7 236 39.4
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 2.6e-31 141.0 203 36.0
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 5.3e-16 90.1 114 51.8
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 6.9e-16 89.7 169 36.7
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 2.9e-14 84.3 59 67.8
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 3.5e-12 77.4 43 72.1
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 3.1e-08 64.3 52 53.8


User provided reference genes

Program Settings