Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 0.0e+00 1335.9 652 100.0
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 8.9e-311 1069.7 600 86.5
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 9.8e-310 1066.2 594 86.4
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.0e-306 1054.7 642 81.0
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 4.0e-303 1044.3 597 83.9
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 8.9e-303 1043.1 622 80.9
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 1.2e-302 1042.7 626 80.4
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 1.5e-302 1042.3 585 84.6
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 2.6e-302 1041.6 622 80.5
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 2.6e-302 1041.6 626 80.2
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 1.3e-301 1039.3 602 82.6
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 1.3e-301 1039.3 619 80.8
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 2.2e-301 1038.5 618 80.9
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 2.9e-301 1038.1 610 81.5
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 4.9e-301 1037.3 585 84.4
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 8.3e-301 1036.6 602 82.9
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 8.3e-301 1036.6 605 82.8
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 8.3e-301 1036.6 622 80.2
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 8.3e-301 1036.6 626 79.6
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 1.1e-300 1036.2 602 82.9
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 1.1e-300 1036.2 586 83.4
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 1.4e-300 1035.8 591 83.1
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 1.4e-300 1035.8 585 84.3
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 2.4e-300 1035.0 602 82.6
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 3.2e-300 1034.6 606 82.5
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 3.2e-300 1034.6 587 84.3
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 3.2e-300 1034.6 625 79.8
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 2.1e-299 1031.9 641 79.1
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 2.7e-299 1031.6 585 82.9
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 2.7e-299 1031.6 593 83.1
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 6.0e-299 1030.4 627 79.3
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 6.0e-299 1030.4 586 84.0
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 602 82.6
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 599 83.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 599 83.0
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 623 79.0
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 597 82.2
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 1.3e-298 1029.2 593 81.8
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 1.7e-298 1028.9 631 78.9
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 587 83.3
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 640 77.3
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 579 83.9
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 620 80.2
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 3.9e-298 1027.7 603 81.1
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 5.1e-298 1027.3 590 82.7
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 5.1e-298 1027.3 599 82.6
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 5.1e-298 1027.3 599 82.6
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 5.1e-298 1027.3 601 81.7
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 5.1e-298 1027.3 625 78.9
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 6.6e-298 1026.9 642 77.9
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 8.6e-298 1026.5 595 81.7
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 8.6e-298 1026.5 592 81.9
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.5e-297 1025.8 624 79.2
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 1.5e-297 1025.8 584 83.4
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 1.5e-297 1025.8 613 79.9
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 1.9e-297 1025.4 586 83.3
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 1.9e-297 1025.4 633 77.4
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 4.3e-297 1024.2 591 82.7
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 4.3e-297 1024.2 623 78.8
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 5.6e-297 1023.8 579 83.8
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 5.6e-297 1023.8 594 81.3
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 5.6e-297 1023.8 624 80.3
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 7.3e-297 1023.5 599 82.3
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 9.5e-297 1023.1 595 81.8
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 9.5e-297 1023.1 624 78.0
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 1.6e-296 1022.3 606 80.4
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 2.8e-296 1021.5 624 79.3
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 2.8e-296 1021.5 638 77.9
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 2.8e-296 1021.5 637 78.2
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 2.8e-296 1021.5 622 79.9
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 2.8e-296 1021.5 579 83.4
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 3.6e-296 1021.1 629 78.4
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 3.6e-296 1021.1 584 83.0
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 3.6e-296 1021.1 627 79.1
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 3.6e-296 1021.1 627 79.1
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 4.7e-296 1020.8 591 81.6
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 4.7e-296 1020.8 622 80.1
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 4.7e-296 1020.8 579 83.1
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.7e-296 1020.8 570 83.7
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 6.2e-296 1020.4 582 82.5
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 6.2e-296 1020.4 624 78.4
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 8.1e-296 1020.0 626 78.9
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 1.4e-295 1019.2 591 81.9
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 2.3e-295 1018.5 587 82.1
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 3.1e-295 1018.1 632 78.8
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 4.0e-295 1017.7 619 79.2
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 5.2e-295 1017.3 591 81.7
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 5.2e-295 1017.3 633 77.6
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 6.8e-295 1016.9 625 78.7
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 8.9e-295 1016.5 602 80.6
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 8.9e-295 1016.5 591 81.6
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 8.9e-295 1016.5 591 81.6
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 8.9e-295 1016.5 597 81.1
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 1.5e-294 1015.8 580 83.4
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.8e-294 1013.8 593 80.6
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 7.5e-294 1013.4 627 78.1
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 2.2e-293 1011.9 594 80.6
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 4.9e-293 1010.7 624 78.8
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 6.4e-293 1010.4 624 77.9
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 8.3e-293 1010.0 573 82.4
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 1.4e-292 1009.2 600 79.3
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 7.8e-291 1003.4 585 81.5
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.7e-290 1002.3 554 84.3
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 5.1e-290 1000.7 624 78.2
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 2.8e-288 995.0 608 78.6
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 2.4e-287 991.9 620 77.7
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.9e-281 972.2 540 84.3
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 2.2e-277 958.7 590 78.8
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 4.9e-277 957.6 627 74.8
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.2e-275 953.0 572 80.4
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 8.4e-269 930.2 609 72.9
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 3.7e-264 914.8 586 75.8
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 5.7e-257 891.0 474 88.2
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.9e-244 849.4 596 70.3
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 2.6e-230 802.4 557 70.0
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 3.0e-189 666.0 635 54.8
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 3.6e-171 605.9 369 78.9
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 1.3e-160 570.9 343 79.9
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 5.5e-143 512.3 267 89.1
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.8e-130 470.7 646 44.9
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 4.4e-76 290.0 217 65.4
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 4.6e-65 253.4 125 89.6
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.6e-38 165.2 103 70.9
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 5.8e-36 156.8 91 80.2
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 3.5e-33 147.5 150 54.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 6.9e-21 106.7 53 94.3
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 7.6e-20 103.2 53 92.5
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.2e-17 95.9 135 40.7
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 5.1e-08 63.9 32 90.6


User provided reference genes

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