Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.7e-251 871.7 493 100.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 9.1e-66 255.4 479 42.6
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.9e-63 247.7 485 40.0
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.6e-62 244.6 484 39.5
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 7.5e-60 235.7 487 39.6
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.7e-59 234.6 481 40.7
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 2.8e-59 233.8 477 39.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.8e-59 233.8 487 39.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 6.3e-59 232.6 480 40.6
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 8.3e-59 232.3 502 40.4
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 8.3e-59 232.3 485 39.6
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.4e-58 231.5 487 41.1
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.4e-58 230.7 496 37.1
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 5.3e-58 229.6 507 37.5
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 7.0e-58 229.2 486 40.1
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.2e-57 228.4 478 39.1
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.2e-57 228.4 479 39.5
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 1.6e-57 228.0 484 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 4.5e-57 226.5 499 41.3
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.0e-56 225.3 486 39.5
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 2.9e-56 223.8 497 38.2
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.8e-56 223.4 483 36.4
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 6.5e-56 222.6 478 39.3
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.1e-55 221.9 473 40.6
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.1e-55 221.9 485 39.4
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.5e-55 221.5 480 37.5
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.5e-55 220.7 487 38.6
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 4.2e-55 219.9 509 36.3
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 4.2e-55 219.9 479 38.4
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 4.2e-55 219.9 479 38.4
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 5.5e-55 219.5 475 39.6
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 7.2e-55 219.2 486 37.2
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 9.4e-55 218.8 483 39.1
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 9.4e-55 218.8 485 38.8
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.6e-54 218.0 481 37.4
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.6e-54 218.0 487 39.0
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.1e-54 217.6 479 38.4
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 2.1e-54 217.6 491 38.3
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.7e-54 217.2 483 38.9
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.7e-54 217.2 480 40.2
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 3.6e-54 216.9 486 39.9
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.6e-54 216.9 516 36.8
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 4.7e-54 216.5 481 37.8
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 4.7e-54 216.5 506 38.3
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 8.0e-54 215.7 481 36.8
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 8.0e-54 215.7 491 37.9
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 8.0e-54 215.7 480 38.1
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 1.0e-53 215.3 482 39.6
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.0e-53 215.3 485 37.3
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.4e-53 214.9 486 39.7
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.8e-53 214.5 484 40.3
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 4.0e-53 213.4 479 38.4
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.8e-53 212.6 501 37.5
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 6.8e-53 212.6 540 37.6
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 8.8e-53 212.2 492 38.4
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.5e-52 211.5 481 39.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.0e-52 211.1 491 38.9
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 2.6e-52 210.7 483 38.7
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 3.4e-52 210.3 476 37.6
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.4e-52 209.9 489 38.9
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 7.5e-52 209.1 486 36.4
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 7.5e-52 209.1 485 38.8
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.5e-52 209.1 490 38.4
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 9.8e-52 208.8 489 36.6
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 9.8e-52 208.8 523 37.1
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.3e-51 208.4 488 37.9
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.3e-51 208.4 483 36.9
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.3e-51 208.4 462 37.9
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.7e-51 208.0 489 38.0
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.2e-51 207.6 261 49.0
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.8e-51 207.2 481 39.3
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 3.7e-51 206.8 478 37.4
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 6.3e-51 206.1 479 38.4
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 8.3e-51 205.7 502 35.3
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 8.3e-51 205.7 489 36.2
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.1e-50 205.3 506 37.2
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 1.1e-50 205.3 481 38.3
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.4e-50 204.9 483 39.8
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.4e-50 204.9 483 38.1
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 3.1e-50 203.8 498 35.5
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 4.1e-50 203.4 488 38.3
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 4.1e-50 203.4 504 38.1
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 5.4e-50 203.0 489 38.4
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.4e-50 203.0 487 38.2
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 5.4e-50 203.0 475 35.6
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 7.0e-50 202.6 481 36.4
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 9.1e-50 202.2 480 36.9
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 3.5e-49 200.3 483 36.6
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.5e-49 200.3 481 37.2
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 4.5e-49 199.9 487 37.8
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.9e-49 199.5 512 35.2
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 5.9e-49 199.5 498 37.1
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 5.9e-49 199.5 482 35.7
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 5.9e-49 199.5 476 35.3
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.7e-49 199.1 498 37.8
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.7e-48 198.0 482 36.5
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.3e-48 197.6 492 38.2
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.9e-48 197.2 514 35.6
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.1e-47 195.3 503 34.6
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.5e-47 194.9 487 37.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 1.5e-47 194.9 494 35.6
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.5e-47 194.1 499 35.3
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 2.5e-47 194.1 524 37.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.5e-47 194.1 514 37.0
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.2e-47 193.4 524 34.2
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 4.2e-47 193.4 486 37.0
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 5.5e-47 193.0 491 36.5
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 5.5e-47 193.0 491 36.5
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 5.5e-47 193.0 491 36.5
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.2e-47 192.6 479 36.7
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 7.2e-47 192.6 480 36.9
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.2e-46 191.8 496 34.3
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.2e-46 191.8 486 38.9
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.1e-46 191.0 480 35.6
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.6e-46 190.3 501 36.3
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.7e-46 189.9 525 36.8
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 6.1e-46 189.5 487 36.8
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.1e-46 189.5 490 35.3
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 6.1e-46 189.5 271 46.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.0e-45 188.7 486 37.7
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.4e-45 188.3 490 36.3
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-45 188.0 496 36.9
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.8e-45 188.0 496 36.9
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.8e-45 188.0 493 34.5
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 3.0e-45 187.2 487 36.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.0e-45 187.2 477 36.5
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.0e-45 187.2 511 36.2
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.2e-45 186.4 481 36.4
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-44 184.9 488 36.1
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 4.4e-44 183.3 509 35.6
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 7.5e-44 182.6 548 33.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 3.7e-43 180.3 510 36.9
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.7e-43 180.3 480 34.6
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.9e-43 179.9 440 36.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 8.3e-43 179.1 481 37.0
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.8e-42 177.9 482 36.1
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 2.4e-42 177.6 424 36.1
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.2e-42 177.2 504 34.7
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 7.0e-42 176.0 476 32.4
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 5.9e-41 172.9 490 33.5
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.7e-40 171.4 496 35.3
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.3e-40 171.0 473 33.2
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.6e-40 169.5 490 33.5
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 8.6e-40 169.1 502 36.3
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 3.6e-38 163.7 505 34.7
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 4.7e-38 163.3 484 31.6
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.6e-36 157.5 493 35.1
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.4e-34 151.0 393 36.9
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 4.1e-34 150.2 486 32.5
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 7.0e-34 149.4 123 61.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-31 142.1 487 33.1
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 7.3e-31 139.4 488 32.6
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 7.3e-31 139.4 488 32.6
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.1e-30 137.9 488 32.4
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.4e-26 124.4 175 45.1
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 3.2e-26 124.0 529 30.6
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 4.0e-21 107.1 216 38.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 8.9e-21 105.9 405 31.6
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.3e-19 102.1 80 58.8
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-17 95.5 103 52.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 8.6e-16 89.4 387 30.7
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 4.4e-12 77.0 89 49.4
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 3.8e-11 73.9 137 39.4
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 5.4e-10 70.1 67 50.7
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-09 67.4 89 40.4
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-08 65.5 81 51.9
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.9e-08 63.9 171 33.9
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 1.9e-07 61.6 132 34.8
Dinv28663 Davidia involucrata HOM05D002258 ORTHO05D002539 7.3e-07 59.7 89 41.6
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 9.6e-07 59.3 84 39.3
Haze_21029 Corylus avellana HOM05D002258 ORTHO05D002539 9.6e-07 59.3 136 33.8
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 1.6e-06 58.5 141 34.0
Cfa023887 Carpinus fangiana HOM05D002258 ORTHO05D002539 2.1e-06 58.2 134 34.3
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 2.1e-06 58.2 583 25.6
HanXRQChr01g0011731 Helianthus annuus HOM05D002258 ORTHO05D002539 2.8e-06 57.8 134 32.8
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 3.6e-06 57.4 95 38.9
PGR102G1166 Punica granatum HOM05D002258 ORTHO05D002539 3.6e-06 57.4 89 38.2
TWI77G0019 Tripterygium wilfordii HOM05D002258 ORTHO05D002539 6.2e-06 56.6 93 40.9
Cpa.g.sc120.59 Carica papaya HOM05D002258 ORTHO05D002539 8.1e-06 56.2 140 32.1
Nitab4.5_0008458g0030 Nicotiana tabacum HOM05D002258 ORTHO05D002539 8.1e-06 56.2 97 40.2
Oeu052506.1 Olea europaea HOM05D002258 ORTHO05D002539 8.1e-06 56.2 164 31.1
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 8.1e-06 56.2 70 45.7


User provided reference genes

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