Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 2.9e-310 1067.8 549 100.0
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 6.1e-196 688.0 529 66.0
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.9e-173 613.2 504 62.3
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 4.3e-173 612.1 507 62.9
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 9.5e-165 584.3 538 57.8
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 6.2e-164 581.6 512 60.2
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 2.3e-163 579.7 512 59.8
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 3.1e-163 579.3 536 58.6
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 5.2e-163 578.6 512 59.4
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 5.2e-163 578.6 536 56.7
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 6.8e-163 578.2 535 56.4
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 8.9e-163 577.8 491 61.3
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.0e-162 576.6 491 60.9
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 9.9e-162 574.3 501 60.3
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 2.2e-161 573.2 491 60.7
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 2.2e-161 573.2 516 58.1
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 2.9e-161 572.8 494 60.3
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 4.9e-161 572.0 514 58.6
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.9e-161 572.0 492 61.2
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 4.9e-161 572.0 502 59.2
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 4.9e-161 572.0 491 60.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 8.3e-161 571.2 511 58.7
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 8.3e-161 571.2 528 56.4
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.1e-160 570.9 501 58.7
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.1e-160 570.9 504 60.1
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 1.1e-160 570.9 530 56.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.4e-160 570.5 500 59.4
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 2.4e-160 569.7 528 56.1
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 2.4e-160 569.7 492 60.2
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 4.1e-160 568.9 488 59.2
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.4e-160 568.5 533 55.9
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 2.1e-159 566.6 545 55.6
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 2.7e-159 566.2 494 59.7
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 2.7e-159 566.2 504 58.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.7e-159 566.2 515 59.0
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 3.5e-159 565.8 511 57.5
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.5e-159 565.8 523 57.4
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 4.6e-159 565.5 501 58.9
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 4.6e-159 565.5 493 60.4
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 6.0e-159 565.1 511 57.5
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 1.0e-158 564.3 493 59.6
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.0e-158 564.3 501 59.3
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.3e-158 563.9 497 60.2
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.3e-158 563.9 511 57.5
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.3e-158 563.9 490 59.6
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 2.3e-158 563.1 488 59.4
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 3.0e-158 562.8 504 58.1
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 3.0e-158 562.8 504 58.9
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.0e-158 562.8 508 58.1
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 3.0e-158 562.8 494 60.3
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.9e-158 562.4 492 59.3
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 5.1e-158 562.0 505 59.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 5.1e-158 562.0 492 59.8
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 5.1e-158 562.0 530 56.8
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 6.6e-158 561.6 504 57.7
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 6.6e-158 561.6 505 57.0
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.1e-157 560.8 532 56.6
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.5e-157 560.5 515 57.1
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.9e-157 560.1 492 60.0
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.3e-157 559.3 492 59.6
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 4.3e-157 558.9 500 57.8
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 4.3e-157 558.9 506 58.9
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 5.6e-157 558.5 504 58.3
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 7.3e-157 558.1 520 57.1
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 9.5e-157 557.8 508 57.7
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 9.5e-157 557.8 501 57.9
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.8e-156 556.2 491 59.1
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.8e-156 556.2 495 58.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 3.6e-156 555.8 507 57.6
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 6.2e-156 555.1 499 58.9
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 8.1e-156 554.7 490 58.4
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.1e-155 554.3 504 57.7
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.4e-155 553.9 492 58.5
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.8e-155 553.5 494 58.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.1e-155 552.7 492 58.9
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 3.1e-155 552.7 534 56.7
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 3.1e-155 552.7 490 58.0
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 5.2e-155 552.0 515 56.9
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 5.2e-155 552.0 495 58.2
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 6.8e-155 551.6 493 58.2
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 6.8e-155 551.6 541 56.4
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 8.9e-155 551.2 489 58.5
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 2.6e-154 549.7 481 59.3
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 4.4e-154 548.9 493 58.8
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 5.8e-154 548.5 500 59.6
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 7.6e-154 548.1 491 59.1
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 9.9e-154 547.7 493 58.2
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.9e-153 546.2 522 56.3
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 4.9e-153 545.4 491 57.8
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.4e-152 543.9 494 57.5
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.5e-151 539.3 500 57.2
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.0e-150 537.7 538 54.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.5e-149 533.1 554 55.1
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 6.2e-148 528.5 488 59.0
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.4e-147 526.6 463 61.6
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.3e-147 525.4 486 58.0
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.3e-147 525.4 473 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.4e-146 522.7 414 65.0
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-142 510.8 557 51.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 8.4e-137 491.5 435 57.9
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 5.4e-136 488.8 629 46.4
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 2.5e-133 479.9 532 50.0
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.1e-125 454.5 462 54.1
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.2e-121 440.3 386 58.3
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 3.0e-118 429.9 565 46.0
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 4.1e-115 419.5 505 47.3
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 7.2e-96 355.5 321 59.2
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 4.0e-86 323.2 356 53.1
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.6e-74 284.6 261 57.1
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 5.9e-74 282.7 260 56.9
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.8e-54 218.0 172 63.4
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.8e-53 213.0 459 34.4
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.2e-50 205.3 280 44.3
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.7e-50 204.1 365 37.8
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 6.2e-47 193.0 151 64.2
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 6.2e-47 193.0 248 42.3
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.0e-45 188.0 188 51.6
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 2.0e-45 188.0 154 61.0
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.1e-43 180.3 135 64.4
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 3.8e-36 157.1 129 63.6
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 4.2e-35 153.7 121 67.8
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.6e-34 151.8 214 41.1
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 4.6e-34 150.2 149 53.7
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 4.3e-32 143.7 123 57.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 8.4e-28 129.4 119 58.8
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.6e-24 115.9 99 61.6
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.6e-24 115.9 99 61.6
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.3e-22 110.2 288 31.2
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.0e-21 108.2 129 48.8
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-19 102.1 156 39.7
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.4e-19 102.1 173 39.9
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 6.0e-18 96.7 211 31.3
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.3e-17 94.7 62 71.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 3.3e-16 90.9 179 38.0
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.8e-14 85.1 78 56.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.0e-12 79.3 110 44.5
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.8e-09 68.6 50 64.0
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.1e-06 59.3 51 62.7


User provided reference genes

Program Settings