Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 6.5e-227 790.4 409 100.0
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 2.4e-120 436.4 320 66.2
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 5.5e-109 398.7 325 60.0
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 5.5e-109 398.7 321 61.7
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 5.5e-109 398.7 321 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 1.6e-108 397.1 327 60.9
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 4.8e-105 385.6 383 53.3
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 1.1e-104 384.4 310 59.4
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 2.4e-104 383.3 395 51.9
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 1.2e-103 380.9 316 58.5
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 1.2e-103 380.9 359 53.5
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 3.5e-103 379.4 332 57.2
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.0e-102 377.9 359 53.5
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 1.3e-102 377.5 319 58.6
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.7e-102 377.1 368 53.0
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 2.9e-102 376.3 358 53.6
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 3.8e-102 375.9 331 56.2
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 3.8e-102 375.9 368 53.0
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 5.0e-102 375.6 353 53.8
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 1.5e-101 374.0 367 52.9
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 3.2e-101 372.9 357 52.4
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 5.5e-101 372.1 321 59.2
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 5.5e-101 372.1 321 58.9
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 5.5e-101 372.1 360 51.9
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 7.2e-101 371.7 323 55.7
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 9.4e-101 371.3 323 55.7
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 1.2e-100 370.9 367 54.5
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.2e-100 370.9 323 56.0
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.2e-100 370.9 337 54.0
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 1.6e-100 370.5 356 54.8
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 1.6e-100 370.5 342 54.1
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.1e-100 370.2 369 53.4
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 2.1e-100 370.2 321 57.6
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 2.1e-100 370.2 318 56.3
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 2.1e-100 370.2 363 54.8
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.1e-100 370.2 343 55.4
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 2.1e-100 370.2 354 52.5
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 4.7e-100 369.0 318 56.9
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 6.1e-100 368.6 360 51.7
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 8.0e-100 368.2 327 56.6
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 8.0e-100 368.2 310 59.0
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 8.0e-100 368.2 360 53.1
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 1.0e-99 367.9 301 57.8
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 2.3e-99 366.7 363 51.5
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 2.3e-99 366.7 348 52.9
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 3.0e-99 366.3 323 55.1
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 5.2e-99 365.5 370 51.6
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 6.8e-99 365.2 360 53.9
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 6.8e-99 365.2 321 56.7
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 6.8e-99 365.2 301 57.8
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 6.8e-99 365.2 321 57.3
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 8.8e-99 364.8 316 57.6
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 8.8e-99 364.8 359 50.7
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 2.6e-98 363.2 318 58.8
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 5.7e-98 362.1 321 55.1
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 7.5e-98 361.7 302 57.9
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 9.8e-98 361.3 303 58.4
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.7e-97 360.5 356 50.6
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 2.2e-97 360.1 379 50.1
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 2.2e-97 360.1 366 53.0
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 2.8e-97 359.8 307 58.3
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 4.8e-97 359.0 358 53.1
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 6.3e-97 358.6 320 55.3
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 6.3e-97 358.6 322 56.8
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 6.3e-97 358.6 331 54.1
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 6.3e-97 358.6 355 53.8
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 8.3e-97 358.2 342 53.5
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 1.1e-96 357.8 325 55.1
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 1.8e-96 357.1 321 55.5
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 1.8e-96 357.1 324 55.2
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 2.4e-96 356.7 357 52.1
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 2.4e-96 356.7 366 51.1
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 4.1e-96 355.9 320 55.0
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 7.0e-96 355.1 370 50.8
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 7.0e-96 355.1 345 53.3
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 1.6e-95 354.0 379 49.6
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 7.7e-95 351.7 357 52.9
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 1.3e-94 350.9 360 50.6
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.7e-94 350.5 375 48.8
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 1.7e-94 350.5 303 57.1
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 2.9e-94 349.7 344 50.6
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.1e-93 347.8 348 52.9
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 4.2e-93 345.9 301 55.5
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 8.0e-92 341.7 368 49.7
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 8.0e-92 341.7 387 50.1
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 1.0e-91 341.3 358 48.9
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 7.5e-90 335.1 361 49.0
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 2.8e-89 333.2 332 53.3
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 2.9e-86 323.2 323 50.8
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 2.9e-86 323.2 363 49.6
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 3.7e-81 306.2 262 56.1
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 6.0e-79 298.9 420 43.8
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 5.0e-78 295.8 291 52.6
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 8.6e-78 295.0 292 53.1
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.5e-77 294.3 248 57.3
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 2.5e-77 293.5 298 50.3
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 4.0e-75 286.2 237 59.9
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 2.0e-74 283.9 276 51.4
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 2.9e-73 280.0 413 40.0
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 6.6e-70 268.9 377 41.6
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 9.5e-69 265.0 339 45.1
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 4.0e-67 259.6 363 44.4
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 1.8e-59 234.2 186 60.8
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 5.8e-58 229.2 192 59.9
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 4.9e-57 226.1 186 59.7
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 1.3e-54 218.0 175 60.0
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 2.1e-52 210.7 269 43.1
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.8e-43 181.0 166 54.2
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 2.4e-43 180.6 144 61.1
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 4.6e-39 166.4 197 45.2
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.6e-31 139.8 137 54.0
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 4.1e-27 126.7 362 30.4
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 4.1e-19 100.1 97 47.4
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 2.5e-16 90.9 161 32.3
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 9.4e-16 89.0 212 34.0
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 2.3e-14 84.3 50 74.0
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 2.0e-13 81.3 194 27.8
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 2.2e-09 67.8 56 58.9
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 6.1e-07 59.7 114 35.1
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 7.9e-07 59.3 116 33.6
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 1.0e-06 58.9 126 33.3
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.8e-06 58.2 122 33.6
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 2.3e-06 57.8 48 56.2
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 3.0e-06 57.4 112 34.8
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 3.0e-06 57.4 112 34.8
CARHR156520 Cardamine hirsuta HOM05D007129 ORTHO05D008680 3.9e-06 57.0 154 32.5
Cfa019070 Carpinus fangiana HOM05D007129 ORTHO05D008680 3.9e-06 57.0 116 35.3
COL.COLO4_04322 Corchorus olitorius HOM05D002131 ORTHO05D008680 3.9e-06 57.0 114 35.1
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 5.1e-06 56.6 103 35.9
Actinidia34958 Actinidia chinensis HOM05D002131 ORTHO05D008680 6.7e-06 56.2 116 34.5
CsaV3_1G008250 Cucumis sativus L. HOM05D007129 ORTHO05D008680 6.7e-06 56.2 226 26.5
Duzib068G0087 Durio zibethinus HOM05D007129 ORTHO05D008680 6.7e-06 56.2 114 35.1
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 8.8e-06 55.8 114 36.0
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 8.8e-06 55.8 112 33.9
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 8.8e-06 55.8 101 33.7
Sp5g14130 Schrenkiella parvula HOM05D007129 ORTHO05D008680 8.8e-06 55.8 153 30.7


User provided reference genes

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