Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1674.4 843 100.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1272.7 838 73.2
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1176.4 840 68.1
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1128.6 842 64.6
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 0.0e+00 1127.1 841 64.9
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1125.9 842 64.5
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1119.4 836 63.8
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1109.7 846 62.6
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1106.7 861 63.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1105.1 844 62.9
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1103.2 842 63.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1101.7 844 62.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1101.3 844 64.0
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1100.9 844 63.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1100.5 845 62.7
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1099.3 844 62.7
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1096.6 841 62.3
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1096.6 837 62.7
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1095.5 845 62.5
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1095.5 850 62.5
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1094.7 850 62.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1094.0 840 62.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1092.0 844 62.4
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1092.0 848 62.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1091.6 844 62.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1091.6 864 61.9
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1090.9 841 63.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1090.9 841 62.9
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1090.5 850 62.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1090.5 841 62.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1090.1 841 62.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1089.7 840 62.4
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1089.3 848 61.9
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1088.9 845 63.1
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1087.4 841 62.7
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1087.0 836 62.4
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1086.6 841 62.3
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1086.6 841 62.5
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1086.2 844 62.8
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1085.5 850 62.4
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1084.7 845 62.5
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1083.2 858 61.7
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1081.6 844 62.3
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1081.2 842 61.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1080.9 845 61.7
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1079.7 842 62.1
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1079.3 841 62.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1077.4 844 62.3
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1076.2 908 58.4
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1076.2 855 60.4
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 1.2e-311 1073.2 847 61.7
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.2e-311 1073.2 921 58.1
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 5.2e-311 1070.8 841 62.2
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 6.9e-311 1070.5 842 61.8
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.5e-310 1069.3 855 60.2
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 2.0e-310 1068.9 836 61.4
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 4.4e-310 1067.8 844 62.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 9.7e-310 1066.6 841 61.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 2.8e-309 1065.1 834 61.8
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 8.2e-309 1063.5 855 60.0
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 8.2e-309 1063.5 893 58.5
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 5.3e-308 1060.8 841 61.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.0e-307 1058.9 855 59.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 4.5e-307 1057.7 863 60.0
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 2.9e-306 1055.0 841 60.9
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-306 1054.7 838 61.1
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.9e-305 1052.4 848 60.3
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 5.5e-305 1050.8 845 61.3
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 6.1e-304 1047.3 849 61.0
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 6.7e-303 1043.9 844 60.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 2.6e-302 1042.0 839 60.3
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 4.4e-302 1041.2 943 55.9
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 1.3e-301 1039.6 857 59.5
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.3e-301 1039.6 914 56.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 5.3e-300 1034.2 854 59.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 7.0e-300 1033.9 908 57.8
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 3.5e-299 1031.6 914 55.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 1.7e-298 1029.2 874 59.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 3.8e-298 1028.1 864 59.3
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 3.8e-298 1028.1 864 59.3
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 3.8e-298 1028.1 864 59.3
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 1.9e-297 1025.8 864 59.1
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 1.9e-297 1025.8 864 59.1
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 1.6e-296 1022.7 864 58.8
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 2.3e-295 1018.8 864 58.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 2.0e-294 1015.8 854 58.7
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 8.3e-293 1010.4 854 58.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.0e-291 1005.7 854 58.8
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 5.9e-291 1004.2 784 62.2
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 3.8e-290 1001.5 853 58.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 3.0e-287 991.9 764 63.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 1.4e-268 929.9 725 61.8
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 3.3e-265 918.7 879 55.3
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 3.0e-250 869.0 841 52.7
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 9.0e-247 857.4 838 52.7
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.7e-235 819.3 850 51.1
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.4e-223 779.6 615 60.5
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 2.0e-222 776.5 861 49.4
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-221 773.9 850 50.2
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.2e-221 773.1 701 57.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.9e-217 760.0 1140 40.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 8.8e-210 734.6 807 48.6
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 5.7e-209 731.9 724 53.6
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.6e-203 713.8 603 58.5
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 4.8e-184 649.0 687 51.4
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 2.0e-182 643.7 854 41.9
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.7e-173 614.0 470 63.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.2e-155 554.7 599 49.6
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 3.6e-155 553.1 403 63.8
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 6.8e-146 522.3 434 61.8
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.5e-145 521.2 471 56.3
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.7e-144 516.5 834 37.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.8e-138 495.7 327 68.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 4.6e-134 483.0 1002 32.8
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 6.6e-133 479.2 353 62.9
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.0e-125 453.8 371 60.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-118 431.0 343 63.3
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.7e-112 411.4 334 65.6
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 6.3e-99 366.3 428 45.8
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.7e-89 332.8 322 58.4
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.7e-86 324.3 578 36.9
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.5e-84 318.5 369 48.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.2e-81 308.9 258 57.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.6e-70 271.9 218 59.6
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.2e-59 235.0 236 49.6
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 3.0e-53 214.5 155 60.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 3.0e-53 214.5 151 63.6
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 4.0e-37 161.0 97 73.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-33 148.3 171 47.4
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-26 124.4 85 65.9
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.7e-24 119.0 115 51.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-23 115.9 87 60.9
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-22 111.3 95 54.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.2e-22 110.5 185 43.8
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 6.2e-22 110.5 67 74.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-21 109.0 93 55.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 8.9e-21 106.7 91 53.8
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.5e-20 105.9 80 58.8
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-20 105.9 102 49.0
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.6e-20 105.1 129 45.0
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-18 97.1 97 55.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 7.1e-18 97.1 98 55.1
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-18 97.1 106 45.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 2.3e-16 92.0 98 54.1
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.9e-16 91.3 91 56.0
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.5e-15 88.6 119 44.5
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-13 82.8 52 69.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 3.1e-13 81.6 52 67.3
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.8e-12 77.4 85 54.1
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-11 75.9 94 46.8
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.6e-09 69.3 54 63.0
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.3e-08 66.2 79 45.6
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-08 65.9 77 49.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.3e-07 61.2 67 44.8
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.3e-07 61.2 50 54.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 8.1e-06 57.0 37 67.6


User provided reference genes

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