Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.2e-262 909.8 658 100.0
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.1e-69 267.3 389 40.4
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 6.7e-56 223.0 415 41.7
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.4e-53 214.5 425 34.6
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.6e-49 200.7 370 51.9
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 3.3e-47 194.1 340 52.1
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.3e-47 194.1 366 49.2
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 2.2e-46 191.4 346 45.7
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 6.3e-46 189.9 341 49.9
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 6.3e-46 189.9 335 45.7
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.4e-45 188.7 330 49.7
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.4e-45 188.0 325 47.7
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 2.4e-45 188.0 339 47.5
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 4.1e-45 187.2 321 55.1
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 1.5e-44 185.3 379 42.7
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.5e-44 185.3 338 47.0
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.6e-44 184.5 369 46.3
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.4e-44 184.1 356 41.9
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.4e-44 184.1 360 43.9
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 7.7e-44 183.0 323 49.5
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 7.7e-44 183.0 338 45.3
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-43 182.2 323 50.5
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.3e-43 182.2 316 52.8
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 5.0e-43 180.3 325 54.5
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 8.5e-43 179.5 323 50.2
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 8.5e-43 179.5 324 51.5
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 8.5e-43 179.5 349 43.3
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 2.5e-42 177.9 323 52.6
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 3.2e-42 177.6 338 47.9
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 5.5e-42 176.8 352 45.5
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 5.5e-42 176.8 398 39.2
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 9.4e-42 176.0 359 37.3
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.6e-41 175.3 332 50.3
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.1e-41 174.9 300 53.7
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.1e-41 174.9 315 52.7
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 4.6e-41 173.7 340 42.6
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 1.8e-40 171.8 315 49.8
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.0e-40 171.0 338 42.3
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 3.0e-40 171.0 342 45.0
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 3.9e-40 170.6 337 51.0
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 5.1e-40 170.2 332 44.9
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 6.7e-40 169.9 323 50.5
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.5e-39 168.7 325 44.0
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 3.3e-39 167.5 331 49.2
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 5.7e-39 166.8 321 43.6
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 9.7e-39 166.0 345 50.1
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 3.7e-38 164.1 341 41.6
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 6.3e-38 163.3 339 45.4
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.1e-37 162.5 356 40.2
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.1e-37 162.5 315 51.1
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.1e-37 162.5 325 51.1
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.8e-37 161.8 332 50.9
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.4e-37 161.4 320 36.2
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.4e-37 161.4 385 40.8
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 4.1e-37 160.6 321 51.7
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 9.1e-37 159.5 326 48.8
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.6e-36 157.9 332 50.0
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 2.9e-35 154.5 308 43.2
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 3.8e-35 154.1 374 46.8
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 6.5e-35 153.3 360 46.9
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 8.5e-35 152.9 321 48.9
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.4e-34 152.1 321 51.7
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.9e-34 151.8 396 28.8
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 7.2e-34 149.8 325 50.8
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 9.4e-34 149.4 333 49.5
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 9.4e-34 149.4 366 45.9
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.2e-33 149.1 336 49.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.7e-33 147.9 324 50.3
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 6.1e-33 146.7 342 37.7
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 3.0e-32 144.4 336 50.0
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.0e-32 144.4 351 29.3
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 6.7e-32 143.3 349 48.4
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.5e-31 142.1 331 47.1
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 2.0e-31 141.7 373 45.3
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 2.0e-31 141.7 334 49.1
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 2.0e-31 141.7 328 48.5
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.0e-31 141.7 323 49.5
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 2.6e-31 141.4 340 48.2
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 2.6e-31 141.4 287 49.8
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 4.4e-31 140.6 338 48.8
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.3e-30 139.0 310 47.1
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.7e-30 138.7 330 45.5
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 8.2e-30 136.3 321 49.5
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.8e-29 135.2 327 48.6
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.8e-29 135.2 337 45.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.4e-29 134.8 353 43.6
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 5.3e-29 133.7 331 48.9
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.2e-28 132.5 321 48.3
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.2e-28 132.5 329 47.4
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 2.0e-28 131.7 351 46.2
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 4.5e-28 130.6 379 44.9
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 5.9e-28 130.2 322 46.6
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 1.0e-27 129.4 321 48.9
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 1.3e-27 129.0 353 45.9
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.3e-27 129.0 334 47.0
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.7e-27 128.6 328 47.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 3.8e-27 127.5 370 43.0
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 5.0e-27 127.1 328 47.0
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.0e-27 127.1 432 42.8
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 8.5e-27 126.3 350 46.0
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.1e-26 125.9 274 41.6
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.9e-26 125.2 349 46.7
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 2.5e-26 124.8 308 33.8
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 3.2e-26 124.4 318 46.5
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 5.5e-26 123.6 328 46.0
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.6e-25 122.1 358 26.5
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 3.6e-25 120.9 138 39.1
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.6e-25 120.9 138 42.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-21 109.0 132 40.2
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 5.3e-21 107.1 126 43.7
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.7e-19 102.1 350 25.7
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 1.1e-18 99.4 127 41.7
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.9e-18 98.6 395 26.8
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 4.0e-16 90.9 341 34.3
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 5.2e-16 90.5 199 51.3
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 9.1e-13 79.7 96 41.7
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 1.6e-12 79.0 145 35.2
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 7.2e-10 70.1 85 40.0
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.0e-08 66.2 80 43.8
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 6.8e-08 63.5 82 40.2


User provided reference genes

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