Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0013 Marchantia polymorpha HOM05D005073 ORTHO05D006166 1.3e-94 349.7 180 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 3.3e-50 202.2 194 57.2
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 3.1e-48 195.7 199 54.8
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 3.1e-48 195.7 199 54.8
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 4.4e-42 175.3 180 49.4
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 1.1e-40 170.6 180 50.0
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 1.1e-40 170.6 224 45.5
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 2.0e-39 166.4 180 47.8
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 5.9e-39 164.9 180 46.7
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 1.3e-38 163.7 180 47.2
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 1.7e-38 163.3 180 44.4
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 3.8e-38 162.2 180 44.4
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 5.0e-38 161.8 180 45.0
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 6.5e-38 161.4 180 46.7
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 6.5e-38 161.4 180 46.7
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 8.5e-38 161.0 180 46.7
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 1.1e-37 160.6 180 43.9
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.5e-37 159.5 180 45.0
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 4.2e-37 158.7 180 43.9
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 7.2e-37 157.9 179 44.1
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 9.4e-37 157.5 180 45.0
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 1.6e-36 156.8 180 42.2
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 2.7e-36 156.0 180 45.0
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 3.6e-36 155.6 180 44.4
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 3.6e-36 155.6 180 44.4
Sc12g0004220 Simmondsia chinensis HOM05D005073 ORTHO05D006166 3.6e-36 155.6 180 46.1
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 4.7e-36 155.2 180 46.1
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 4.7e-36 155.2 178 44.9
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 4.7e-36 155.2 180 46.7
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 4.7e-36 155.2 182 44.0
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 6.1e-36 154.8 181 46.4
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 6.1e-36 154.8 178 45.5
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 6.1e-36 154.8 178 45.5
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 6.1e-36 154.8 184 44.0
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 1.0e-35 154.1 180 45.0
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 1.4e-35 153.7 183 44.8
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 1.8e-35 153.3 178 45.5
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 1.8e-35 153.3 178 45.5
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 1.8e-35 153.3 180 45.0
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 2.3e-35 152.9 180 46.7
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 2.3e-35 152.9 180 44.4
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 2.3e-35 152.9 180 46.1
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 3.0e-35 152.5 182 45.6
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 3.0e-35 152.5 182 45.6
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 3.0e-35 152.5 180 45.6
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 6.8e-35 151.4 181 44.2
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 8.8e-35 151.0 182 45.1
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 1.5e-34 150.2 180 43.9
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 1.5e-34 150.2 180 43.9
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 1.5e-34 150.2 181 43.6
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 2.0e-34 149.8 180 44.4
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 2.6e-34 149.4 180 45.6
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 2.6e-34 149.4 182 45.1
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 3.4e-34 149.1 180 45.0
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 3.4e-34 149.1 177 43.5
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 3.4e-34 149.1 180 42.2
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 3.4e-34 149.1 180 42.2
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 4.4e-34 148.7 181 44.8
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 4.4e-34 148.7 183 45.4
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 4.4e-34 148.7 180 42.2
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 4.4e-34 148.7 183 45.4
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 5.7e-34 148.3 183 44.8
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 7.5e-34 147.9 180 43.9
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 7.5e-34 147.9 180 43.9
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 9.8e-34 147.5 181 44.8
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 9.8e-34 147.5 181 44.8
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 9.8e-34 147.5 181 44.8
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 9.8e-34 147.5 180 42.2
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 9.8e-34 147.5 183 43.7
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 1.3e-33 147.1 183 43.7
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.3e-33 147.1 180 45.6
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 1.7e-33 146.7 180 43.9
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.7e-33 146.7 180 42.2
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 2.2e-33 146.4 180 42.2
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 2.8e-33 146.0 178 40.4
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 4.8e-33 145.2 180 43.9
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 6.3e-33 144.8 180 43.3
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 6.3e-33 144.8 180 41.7
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 8.3e-33 144.4 183 44.8
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 8.3e-33 144.4 180 43.9
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 1.4e-32 143.7 183 43.2
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 1.4e-32 143.7 181 42.5
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 1.8e-32 143.3 182 42.3
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 3.1e-32 142.5 180 43.9
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 5.4e-32 141.7 180 42.2
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 5.4e-32 141.7 184 44.6
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 9.1e-32 141.0 184 44.0
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 1.6e-31 140.2 183 43.7
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 2.0e-31 139.8 180 41.7
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 2.0e-31 139.8 180 42.2
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 2.7e-31 139.4 182 41.8
Ah.16g109540 Amaranthus hybridus HOM05D005073 ORTHO05D006166 2.7e-31 139.4 177 42.4
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 2.7e-31 139.4 180 41.7
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 4.5e-31 138.7 192 39.6
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 1.3e-30 137.1 172 44.2
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 1.7e-30 136.7 184 42.4
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 2.9e-30 136.0 195 41.5
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 1.5e-29 133.7 132 48.5
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 2.8e-28 129.4 166 42.2
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 1.0e-27 127.5 221 35.7
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.2e-26 124.0 171 41.5
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 9.8e-26 120.9 195 39.5
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 2.9e-22 109.4 136 44.1
MELO3C027311.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.5e-21 107.1 167 36.5
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 1.5e-10 70.5 115 35.7


User provided reference genes

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