Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 9.3e-153 543.5 275 100.0
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 4.8e-56 222.2 277 48.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 8.1e-56 221.5 281 47.0
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-48 197.2 266 46.6
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 6.2e-48 195.3 267 46.1
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 9.0e-47 191.4 264 45.8
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 9.0e-47 191.4 271 45.4
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.6e-46 189.9 216 49.1
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 5.8e-46 188.7 264 45.1
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 7.6e-46 188.3 219 49.8
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.0e-45 188.0 216 45.4
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.3e-45 187.6 266 44.4
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.7e-45 187.2 230 45.2
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.7e-45 187.2 262 43.1
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 2.9e-45 186.4 217 49.3
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 3.8e-45 186.0 217 49.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 3.8e-45 186.0 226 48.2
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 3.8e-45 186.0 216 48.1
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 8.4e-45 184.9 266 43.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-44 184.5 233 47.6
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-44 184.1 221 47.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.9e-44 183.7 235 44.3
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 3.2e-44 183.0 262 43.1
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 4.2e-44 182.6 216 49.5
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 4.2e-44 182.6 246 44.7
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.5e-44 182.2 262 44.7
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 5.5e-44 182.2 236 46.2
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.1e-44 181.8 216 46.3
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.1e-44 181.8 216 46.3
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 7.1e-44 181.8 262 43.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 7.1e-44 181.8 216 46.8
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 9.3e-44 181.4 219 46.6
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 9.3e-44 181.4 265 43.8
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.2e-43 181.0 224 45.5
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.2e-43 181.0 219 45.2
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.6e-43 180.6 277 43.3
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.1e-43 180.3 235 45.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.7e-43 179.9 262 43.1
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.7e-43 179.9 214 48.1
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 3.5e-43 179.5 239 43.1
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.6e-43 179.1 220 46.4
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.6e-43 179.1 235 43.8
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 6.0e-43 178.7 262 42.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 6.0e-43 178.7 221 48.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 6.0e-43 178.7 268 44.4
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 7.9e-43 178.3 262 42.7
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 7.9e-43 178.3 214 46.7
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 7.9e-43 178.3 236 45.3
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 7.9e-43 178.3 219 44.7
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 7.9e-43 178.3 219 44.3
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.0e-42 177.9 245 46.5
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.3e-42 177.6 216 46.3
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.3e-42 177.6 216 46.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.3e-42 177.6 236 44.5
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.3e-42 177.6 219 46.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.8e-42 177.2 235 44.7
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-42 176.8 235 43.0
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.3e-42 176.8 216 48.1
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 3.0e-42 176.4 268 42.9
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.9e-42 176.0 262 42.4
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.9e-42 176.0 241 44.4
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.9e-42 176.0 217 45.6
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 3.9e-42 176.0 237 43.9
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 8.7e-42 174.9 216 44.9
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.1e-41 174.5 229 45.4
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.1e-41 174.5 258 41.9
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.5e-41 174.1 242 43.4
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.5e-41 174.1 215 46.5
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.5e-41 174.1 242 43.4
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.9e-41 173.7 236 43.2
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.5e-41 173.3 245 45.7
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 2.5e-41 173.3 262 42.0
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 3.3e-41 172.9 233 45.5
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 7.4e-41 171.8 216 44.0
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 9.6e-41 171.4 261 42.5
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 9.6e-41 171.4 244 42.6
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.3e-40 171.0 241 42.3
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.6e-40 170.6 262 41.2
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.8e-40 169.1 268 39.9
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 8.2e-40 168.3 112 68.8
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.4e-39 167.5 236 41.1
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.8e-39 167.2 112 68.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.8e-39 167.2 270 41.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.8e-39 167.2 266 41.7
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 5.3e-39 165.6 262 40.1
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 6.9e-39 165.2 239 40.6
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 6.9e-39 165.2 110 71.8
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 9.0e-39 164.9 125 61.6
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.2e-38 164.5 262 40.1
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.5e-38 162.5 112 67.9
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.6e-35 154.1 205 43.9
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 2.1e-35 153.7 112 63.4
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.7e-35 153.3 298 36.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.5e-35 152.9 262 39.7
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.0e-34 151.4 254 38.2
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.9e-34 149.4 112 60.7
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.9e-33 147.1 229 40.2
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.7e-32 142.9 237 38.4
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.1e-31 139.8 202 42.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.4e-30 136.3 106 61.3
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.7e-29 134.0 83 69.9
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.2e-28 129.8 236 37.7
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.5e-28 129.0 109 57.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.6e-27 126.3 247 37.7
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.1e-26 122.5 101 61.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.3e-25 119.4 241 36.5
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.7e-24 117.5 230 35.2
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 6.3e-24 115.5 241 33.2
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.8e-23 114.0 178 39.3
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 4.1e-23 112.8 190 37.9
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.2e-22 111.3 176 39.2
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 4.5e-22 109.4 178 38.8
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 5.9e-22 109.0 140 45.0
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 7.7e-22 108.6 70 64.3
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.8e-21 106.3 221 35.7
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.8e-21 106.3 123 52.0
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.9e-20 104.0 84 54.8
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.9e-19 98.6 72 62.5
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 3.9e-18 96.3 69 65.2
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.8e-18 95.1 217 34.1
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.5e-17 94.4 66 62.1
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 3.5e-14 83.2 57 61.4
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.5e-12 77.8 53 60.4
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 4.2e-12 76.3 150 35.3
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.0e-10 69.7 40 75.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 4.4e-09 66.2 49 63.3
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 5.7e-09 65.9 44 68.2
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 2.8e-08 63.5 104 40.4
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 3.7e-08 63.2 39 66.7
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.8e-07 60.8 45 62.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.4e-07 60.5 45 62.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.3e-07 59.3 45 60.0
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 5.3e-07 59.3 45 57.8
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.9e-06 55.8 39 64.1


User provided reference genes

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