Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 8.1e-66 253.4 115 100.0
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 9.9e-64 246.5 115 94.8
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 93.0
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 91.3
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 90.4
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 90.4
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 90.4
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 89.6
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 89.6
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 90.4
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 89.6
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.9e-59 232.3 114 88.6
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.8
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.8
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 88.7
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 88.7
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 88.7
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.0
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.0
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 88.7
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 89.6
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.8
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 88.7
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 88.7
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 85.2
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 86.1
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 85.2
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 85.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 89.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 86.1
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 84.3
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 85.2
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 87.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 85.2
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 85.2
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 85.2
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 85.2
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 87.0
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 85.2
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 86.1
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 85.2
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 83.5
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 87.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 84.3
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 84.3
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 84.3
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 85.2
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 85.2
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 83.5
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 83.5
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 4.4e-56 221.1 135 76.3
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 9.9e-56 219.9 115 84.3
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.3e-55 219.5 115 83.5
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.8e-55 218.0 134 75.4
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 4.9e-55 217.6 115 82.6
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 92.4
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 7.1e-54 213.8 105 90.5
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.6e-53 212.6 115 80.0
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.7e-53 211.8 114 80.7
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 3.5e-53 211.5 105 88.6
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 1.0e-52 209.9 112 83.9
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.0e-52 209.9 112 83.9
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.5e-51 206.1 113 78.8
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.5e-51 206.1 113 78.8
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 7.3e-51 203.8 105 83.8
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 9.6e-51 203.4 105 87.6
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.3e-50 203.0 105 83.8
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 78.3
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.6e-50 201.4 105 82.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 4.8e-50 201.1 112 78.6
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.1e-49 199.9 115 79.1
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 4.0e-49 198.0 128 72.7
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 6.9e-49 197.2 112 75.9
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 9.0e-49 196.8 112 75.9
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 9.0e-49 196.8 112 75.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.3e-47 193.0 115 69.6
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.3e-47 193.0 114 71.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 4.9e-47 191.0 115 70.4
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.4e-46 188.7 115 67.8
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-46 188.7 114 71.9
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.2e-46 188.3 115 72.2
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.6e-45 186.0 130 66.2
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.7e-45 185.3 98 84.7
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.3e-44 183.0 114 70.2
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 4.3e-43 177.9 115 65.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 6.2e-42 174.1 114 70.2
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.2e-40 169.9 88 87.5
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 2.6e-40 168.7 115 72.2
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.4e-40 168.3 115 59.1
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 5.8e-40 167.5 180 50.6
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.1e-38 163.3 93 79.6
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.4e-38 162.9 84 88.1
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 2.4e-38 162.2 90 82.2
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 4.2e-38 161.4 88 83.0
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 9.3e-38 160.2 80 87.5
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.2e-37 159.8 94 78.7
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 2.1e-37 159.1 79 87.3
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.7e-37 158.7 80 87.5
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 3.5e-37 158.3 81 85.2
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.5e-37 158.3 80 87.5
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.8e-36 156.0 82 82.9
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 3.9e-36 154.8 88 77.3
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 5.1e-36 154.5 80 83.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.3e-34 149.8 77 89.6
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 2.1e-34 149.1 80 83.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 3.7e-34 148.3 81 81.5
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 8.1e-34 147.1 84 78.6
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 8.1e-34 147.1 81 82.7
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 3.4e-32 141.7 110 54.5
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 6.0e-29 131.0 111 51.4
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 5.9e-24 114.4 64 84.4
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 8.4e-23 110.5 114 46.5
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.9e-22 109.4 61 75.4
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 3.2e-22 108.6 97 48.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-21 106.7 113 44.2
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.3e-20 102.4 71 67.6
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.1e-19 100.1 56 80.4
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.3e-18 96.7 54 85.2
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 4.1e-17 91.7 113 44.2
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.9e-16 87.8 119 37.0
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 7.7e-16 87.4 48 77.1
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 5.0e-15 84.7 64 51.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.2e-14 81.6 54 70.4
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.9e-13 77.4 104 37.5
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 3.0e-12 75.5 105 38.1
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.8e-09 66.2 37 81.1
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 5.3e-09 64.7 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 5.9e-08 61.2 113 27.4
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.9e-08 61.2 116 32.8
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.9e-08 61.2 115 28.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.7e-07 59.7 115 28.7
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 8.5e-07 57.4 112 32.1
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.4e-06 56.6 88 35.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.4e-06 56.6 114 27.2
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 7.2e-06 54.3 113 29.2
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 9.4e-06 53.9 115 26.1


User provided reference genes

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