Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1659.8 817 100.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 820 73.9
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1181.8 811 70.9
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1127.1 813 68.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1125.2 817 67.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1123.2 815 66.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1122.5 813 68.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1121.7 815 67.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1121.7 814 67.0
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1120.1 815 67.2
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1116.3 814 66.6
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1110.9 813 67.2
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1110.1 816 66.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1107.8 816 66.1
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1107.0 816 66.3
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1101.3 814 66.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1100.9 814 65.4
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 815 65.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1100.1 814 65.6
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1100.1 812 67.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1099.3 814 65.5
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1098.2 815 66.7
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1098.2 814 66.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1097.8 827 64.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1097.4 812 66.5
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 813 66.3
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1096.3 814 65.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1095.5 815 65.8
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1095.1 813 67.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 0.0e+00 1095.1 803 67.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 816 66.7
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 815 65.5
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1094.3 812 66.4
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1094.3 812 66.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1094.3 815 65.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1094.3 815 65.8
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1092.8 813 67.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1091.6 814 66.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1091.6 810 65.2
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1091.3 814 65.7
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1090.9 818 64.9
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 813 66.2
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 809 65.4
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 808 65.8
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1090.5 820 64.8
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 818 64.8
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 813 65.4
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1089.7 813 66.3
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1089.3 813 64.7
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1088.9 812 66.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1087.4 815 65.5
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1087.0 811 64.9
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1087.0 825 65.1
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 813 66.2
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 814 65.8
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1086.2 818 64.7
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1085.9 808 65.0
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1085.9 818 64.5
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1083.9 814 66.7
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1083.9 814 65.0
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1083.6 810 65.7
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1083.6 821 64.8
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1082.0 810 65.2
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1080.1 812 66.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1078.9 813 65.7
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1078.9 816 65.0
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1078.5 813 66.2
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1077.8 811 65.0
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1077.4 812 64.5
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1077.0 816 65.3
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1076.6 814 65.2
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 5.6e-312 1074.3 812 65.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 5.6e-312 1074.3 821 64.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 1.1e-311 1073.2 810 64.3
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 1.7e-311 1072.4 892 60.4
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 1.7e-311 1072.4 814 65.0
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 2.2e-311 1072.0 814 65.4
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 3.9e-311 1071.2 814 64.5
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 8.4e-311 1070.1 808 64.0
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 1.6e-309 1065.8 872 61.5
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 2.7e-309 1065.1 811 64.2
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 1.8e-308 1062.4 813 63.8
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 1.8e-308 1062.4 809 64.8
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 2.3e-308 1062.0 811 63.0
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 3.0e-308 1061.6 815 63.9
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 2.0e-307 1058.9 804 64.2
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 4.4e-307 1057.7 813 63.3
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 1.3e-306 1056.2 819 63.6
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 2.2e-306 1055.4 859 61.2
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 1.8e-305 1052.4 823 62.6
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 1.2e-304 1049.7 817 63.4
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 3.8e-303 1044.6 814 62.7
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 6.5e-303 1043.9 815 63.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 3.2e-302 1041.6 868 61.3
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 5.5e-302 1040.8 815 62.7
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.7e-301 1038.5 814 63.1
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 3.6e-301 1038.1 818 64.2
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 1.0e-300 1036.6 807 63.3
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 1.5e-299 1032.7 812 62.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 1.4e-297 1026.2 803 63.4
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 2.5e-294 1015.4 830 60.8
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 1.0e-292 1010.0 838 61.1
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 1.2e-291 1006.5 814 62.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 2.8e-290 1001.9 770 64.8
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 1.7e-279 966.1 812 60.6
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.3e-279 965.7 814 60.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 1.1e-278 963.4 788 61.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 1.5e-278 963.0 920 54.7
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 2.5e-278 962.2 814 59.8
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.0e-271 940.3 970 52.0
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 1.2e-264 916.8 968 50.5
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 4.4e-259 898.3 815 57.4
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 4.0e-244 848.6 816 54.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.2e-242 842.8 811 53.4
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 6.0e-240 834.7 608 67.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.1e-204 717.6 857 46.8
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 9.4e-201 704.5 785 50.2
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.9e-161 573.9 842 40.0
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 6.8e-159 565.5 379 70.7
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 7.3e-153 545.4 856 38.1
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 2.6e-150 537.0 949 35.3
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 6.6e-138 495.7 390 63.8
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.2e-132 476.9 813 37.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.8e-98 364.8 316 57.0
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.5e-94 351.7 244 68.9
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 5.7e-81 306.6 344 48.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 5.0e-69 266.9 227 59.5
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 9.5e-60 236.1 206 58.3
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 6.6e-53 213.4 176 58.0
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 8.1e-43 179.9 325 37.8
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.9e-36 158.7 143 59.4
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.8e-35 154.8 196 48.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 5.8e-33 147.1 136 51.5
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.4e-31 141.7 111 59.5
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 3.2e-31 141.4 90 72.2
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 7.8e-30 136.7 121 55.4
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.7e-29 135.6 191 44.5
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.7e-27 127.5 103 55.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.4e-26 125.9 271 35.1
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.9e-23 115.5 99 58.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.4e-23 115.2 124 50.8
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.6e-22 112.5 181 38.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.3e-21 109.4 104 51.9
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 4.8e-19 100.9 120 47.5
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.3e-18 97.4 80 62.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.5e-17 95.9 262 27.1
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.2e-16 92.0 66 62.1
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 7.1e-15 87.0 183 32.8
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.9e-13 81.3 43 81.4
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-12 79.7 50 70.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.6e-11 75.9 73 49.3
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.8e-11 75.1 54 66.7
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.1e-10 73.2 143 41.3
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 3.1e-10 71.6 63 55.6
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 9.0e-10 70.1 59 45.8
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.3e-08 66.2 51 66.7
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 2.9e-08 65.1 295 24.7
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 4.9e-08 64.3 382 20.9
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.4e-07 62.0 125 34.4
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.4e-07 62.0 471 20.8
CBR_g21302 Chara braunii HOM05D002714 ORTHO05D020415 4.2e-07 61.2 320 23.8
Rhsim01G0254800 Rhododendron simsii HOM05D002747 ORTHO05D003069 4.2e-07 61.2 70 40.0
A10p03240 Brassica napus HOM05D004895 ORTHO05D003385 5.5e-07 60.8 122 32.8
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 9.3e-07 60.1 111 36.0
Gohir.A03G094800 Gossypium hirsutum HOM05D002747 ORTHO05D003069 2.7e-06 58.5 90 40.0
Gohir.A01G092100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 3.5e-06 58.2 71 40.8
Gohir.D01G062300 Gossypium hirsutum HOM05D000747 ORTHO05D001683 3.5e-06 58.2 71 40.8
Gorai.002G100900 Gossypium raimondii HOM05D000747 ORTHO05D001683 3.5e-06 58.2 71 40.8
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 3.5e-06 58.2 80 38.8
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 3.5e-06 58.2 552 21.4
Peaxi162Scf00652g00122 Petunia axillaris HOM05D002747 ORTHO05D003069 4.6e-06 57.8 90 33.3
Sabra16G0200100 Salix brachista HOM05D002747 ORTHO05D003069 4.6e-06 57.8 137 31.4
Manes.03G146600 Manihot esculenta HOM05D002747 ORTHO05D003069 6.0e-06 57.4 77 37.7
Potri.017G056900 Populus trichocarpa HOM05D002747 ORTHO05D003069 6.0e-06 57.4 107 33.6
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 7.9e-06 57.0 92 34.8
MD05G1173000 Malus domestica HOM05D002747 ORTHO05D003069 7.9e-06 57.0 69 40.6


User provided reference genes

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