Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 3.1e-222 775.0 443 100.0
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 5.5e-147 525.0 479 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 5.6e-99 365.5 305 63.6
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 3.6e-90 336.3 299 60.5
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 5.3e-81 305.8 293 55.6
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 5.7e-75 285.8 311 53.1
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 3.4e-72 276.6 294 53.4
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 2.2e-66 257.3 263 56.3
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 7.7e-64 248.8 405 50.4
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 1.7e-63 247.7 303 47.9
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 1.1e-62 245.0 261 54.0
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 6.7e-60 235.7 266 51.9
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 1.5e-59 234.6 267 52.8
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 6.3e-58 229.2 261 52.5
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 8.2e-58 228.8 274 49.3
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 1.1e-57 228.4 263 51.3
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 1.1e-57 228.4 260 52.3
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 5.3e-57 226.1 259 51.0
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 5.3e-57 226.1 265 50.6
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 1.2e-56 224.9 260 51.5
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 1.2e-56 224.9 263 51.3
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 2.0e-56 224.2 261 50.2
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 2.0e-56 224.2 261 51.3
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 2.6e-56 223.8 262 50.8
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 3.4e-56 223.4 262 50.8
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 5.9e-56 222.6 263 51.0
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 5.9e-56 222.6 264 50.8
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 7.7e-56 222.2 268 50.4
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 7.7e-56 222.2 262 50.4
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 1.7e-55 221.1 263 49.8
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 1.7e-55 221.1 264 48.5
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 2.2e-55 220.7 261 51.0
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 2.9e-55 220.3 262 49.6
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 2.9e-55 220.3 267 50.9
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 3.8e-55 219.9 266 49.2
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 5.0e-55 219.5 260 50.4
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 6.5e-55 219.2 267 50.6
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 6.5e-55 219.2 267 49.8
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 8.5e-55 218.8 258 50.8
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 8.5e-55 218.8 257 51.0
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.1e-54 218.4 265 49.1
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 1.1e-54 218.4 267 50.2
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.9e-54 217.6 267 50.2
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.9e-54 217.6 444 38.7
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 4.2e-54 216.5 270 49.6
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 5.5e-54 216.1 267 50.2
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 5.5e-54 216.1 259 50.6
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 7.2e-54 215.7 258 46.9
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 7.2e-54 215.7 262 48.5
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 9.4e-54 215.3 267 49.1
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 1.2e-53 214.9 260 49.2
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 1.2e-53 214.9 275 48.0
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.6e-53 214.5 257 50.2
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.6e-53 214.5 267 49.1
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 2.1e-53 214.2 257 50.2
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 2.7e-53 213.8 263 48.7
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 3.6e-53 213.4 264 49.2
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 6.1e-53 212.6 262 49.6
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 7.9e-53 212.2 261 48.3
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.0e-52 211.8 261 49.4
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.0e-52 211.8 261 49.4
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 2.3e-52 210.7 263 49.4
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 3.0e-52 210.3 261 49.4
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 3.0e-52 210.3 260 48.8
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 3.9e-52 209.9 257 49.8
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 5.1e-52 209.5 260 48.1
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 6.7e-52 209.1 426 37.6
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 1.1e-51 208.4 266 47.7
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.1e-51 208.4 264 48.9
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 1.5e-51 208.0 271 45.8
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 2.0e-51 207.6 268 49.6
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 2.0e-51 207.6 459 43.1
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 2.6e-51 207.2 260 47.7
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 3.3e-51 206.8 262 50.0
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 5.7e-51 206.1 266 48.5
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 5.7e-51 206.1 269 45.7
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 5.7e-51 206.1 460 38.0
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 7.4e-51 205.7 262 49.6
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 7.4e-51 205.7 262 49.6
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 9.7e-51 205.3 262 49.6
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 9.7e-51 205.3 262 49.6
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 1.3e-50 204.9 263 48.3
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 2.2e-50 204.1 262 49.2
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 2.8e-50 203.8 263 48.3
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 2.8e-50 203.8 265 47.2
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 3.7e-50 203.4 261 49.0
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 3.7e-50 203.4 240 49.6
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 3.7e-50 203.4 460 37.8
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 4.8e-50 203.0 237 50.2
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.8e-50 203.0 225 52.4
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.8e-50 203.0 225 52.4
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 4.8e-50 203.0 225 52.4
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 6.3e-50 202.6 331 52.3
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 1.8e-49 201.1 268 48.1
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 4.1e-49 199.9 260 45.8
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 9.1e-49 198.7 270 45.6
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.2e-48 198.4 268 48.1
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 2.0e-48 197.6 263 46.8
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.6e-48 197.2 266 47.7
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 7.7e-48 195.7 262 45.8
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 1.3e-47 194.9 262 46.2
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 2.2e-47 194.1 263 46.4
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 2.2e-47 194.1 237 49.4
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-47 194.1 266 46.2
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-47 194.1 266 46.6
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.9e-47 193.7 252 47.6
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 5.0e-47 193.0 270 45.6
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 1.5e-46 191.4 266 46.2
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.9e-46 191.0 250 47.6
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 7.2e-46 189.1 205 54.1
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 1.2e-45 188.3 221 52.0
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 3.0e-44 183.7 263 45.2
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.0e-44 183.3 262 45.4
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.2e-44 183.0 262 46.2
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 1.1e-43 181.8 283 39.9
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 4.4e-43 179.9 325 40.9
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 8.2e-42 175.6 263 44.1
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 3.1e-41 173.7 262 42.4
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 9.1e-41 172.2 235 47.2
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.6e-40 170.6 239 46.4
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 1.1e-38 165.2 196 49.5
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 1.2e-37 161.8 204 48.5
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 9.8e-35 152.1 147 53.1
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 2.2e-34 151.0 207 42.0
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 3.7e-34 150.2 184 50.5
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 2.4e-33 147.5 176 48.9
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 1.2e-32 145.2 220 41.8
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 4.5e-32 143.3 177 46.9
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 2.9e-31 140.6 154 52.6
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 6.5e-31 139.4 127 57.5
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 1.4e-28 131.7 161 49.7
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 3.4e-27 127.1 263 36.5
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 3.4e-27 127.1 156 48.7
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 3.4e-27 127.1 286 36.7
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 9.1e-25 119.0 193 40.9
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 4.5e-24 116.7 189 40.2
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 1.0e-23 115.5 276 34.8
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.1e-22 112.1 338 33.1
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 2.5e-22 110.9 273 30.0
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-21 107.5 163 44.8
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-21 107.5 163 44.8
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-21 107.5 163 44.8
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.6e-21 107.1 163 44.8
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.6e-21 107.1 163 44.8
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-20 105.5 163 44.2
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-20 105.5 163 44.2
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-20 105.5 158 44.9
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-20 105.5 163 44.2
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-20 105.5 163 44.2
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-20 105.1 163 44.2
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.0e-20 104.0 163 44.2
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.0e-20 103.6 163 43.6
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.8e-20 102.8 163 43.6
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-19 100.9 163 42.9
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 1.1e-17 95.5 142 45.1
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-17 95.1 163 42.9
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 3.9e-15 87.0 112 46.4
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 6.6e-15 86.3 260 39.6
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 6.6e-15 86.3 86 58.1
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.0e-12 77.0 150 39.3
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 6.8e-12 76.3 51 60.8
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 8.9e-12 75.9 71 54.9
COL.COLO4_13929 Corchorus olitorius HOM05D003639 ORTHO05D004246 4.9e-10 70.1 177 32.2
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 6.4e-10 69.7 76 52.6
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-09 67.8 174 35.6
AUR62024855 Chenopodium quinoa HOM05D000836 ORTHO05D000709 1.5e-06 58.5 119 31.9
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 2.5e-06 57.8 123 36.6
BcaC02g12785 Brassica carinata HOM05D003639 ORTHO05D004246 3.3e-06 57.4 82 45.1
AUR62032365 Chenopodium quinoa HOM05D000836 ORTHO05D000709 3.3e-06 57.4 173 28.9
CBR_g32473 Chara braunii HOM05D003335 ORTHO05D003853 5.6e-06 56.6 204 24.5


User provided reference genes

Program Settings