Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.3e-147 525.0 266 100.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.3e-84 316.2 264 62.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.7e-82 310.1 216 70.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 5.6e-78 295.0 266 62.4
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.9e-76 287.7 187 75.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.3e-74 283.9 188 74.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.2e-74 283.1 174 78.7
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.9e-74 282.7 190 73.2
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.8e-74 282.3 174 78.2
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 4.9e-74 282.0 182 75.8
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 6.4e-74 281.6 235 63.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.4e-74 281.2 204 68.1
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.4e-73 280.4 177 75.7
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.9e-73 280.0 190 71.1
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.2e-73 279.3 193 71.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 4.1e-73 278.9 190 70.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 7.1e-73 278.1 196 69.4
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 7.1e-73 278.1 196 69.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 7.1e-73 278.1 189 72.5
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.2e-73 277.7 246 62.6
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 9.2e-73 277.7 189 71.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 9.2e-73 277.7 176 75.0
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 9.2e-73 277.7 180 75.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.2e-72 277.3 188 72.3
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.2e-72 277.3 177 76.3
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-72 276.9 195 70.3
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-72 276.9 195 70.3
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.6e-72 276.9 183 74.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.6e-72 276.9 181 73.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.6e-72 276.9 186 71.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-72 276.9 182 74.2
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-72 276.9 182 74.2
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.6e-72 276.9 177 75.7
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.1e-72 276.6 188 71.8
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.1e-72 276.6 183 73.2
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.1e-72 276.6 178 76.4
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.7e-72 276.2 179 76.5
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.5e-72 275.8 195 70.3
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.5e-72 275.8 177 74.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 4.6e-72 275.4 203 67.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.6e-72 275.4 178 74.7
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 6.0e-72 275.0 188 71.3
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 6.0e-72 275.0 265 58.1
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 6.0e-72 275.0 177 74.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.8e-72 274.6 195 68.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 7.8e-72 274.6 185 72.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 7.8e-72 274.6 178 75.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.8e-72 274.6 196 69.9
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 7.8e-72 274.6 181 72.9
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 7.8e-72 274.6 188 72.3
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 7.8e-72 274.6 174 75.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.0e-71 274.2 195 68.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.0e-71 274.2 194 70.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.0e-71 274.2 177 75.1
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.3e-71 273.9 178 74.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.3e-71 273.9 178 74.2
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.3e-71 273.1 180 73.9
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.3e-71 273.1 189 69.3
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.3e-71 273.1 188 70.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.3e-71 273.1 177 73.4
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.0e-71 272.7 188 70.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 3.0e-71 272.7 179 74.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.9e-71 272.3 179 73.7
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.9e-71 272.3 201 67.7
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 5.1e-71 271.9 199 68.3
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.6e-71 271.6 182 73.1
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 6.6e-71 271.6 186 71.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 8.6e-71 271.2 194 70.1
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 8.6e-71 271.2 185 69.7
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.1e-70 270.8 177 73.4
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.1e-70 270.8 174 76.4
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.1e-70 270.8 177 74.6
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.9e-70 270.0 176 73.9
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.9e-70 270.0 183 72.7
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.9e-70 270.0 196 66.3
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.5e-70 269.6 177 74.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.5e-70 269.6 196 65.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.3e-70 268.9 187 69.5
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.3e-70 268.9 189 68.8
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 7.3e-70 268.1 219 62.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.3e-70 268.1 194 68.6
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.6e-70 267.7 187 68.4
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-69 267.3 182 72.5
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.2e-69 267.3 199 69.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 258 58.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.6e-69 266.9 179 70.4
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.1e-69 266.5 198 67.7
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.1e-69 266.5 186 69.4
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.1e-69 266.5 183 71.0
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-69 266.2 179 71.5
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.8e-69 266.2 179 71.5
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-69 266.2 268 54.9
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 3.6e-69 265.8 180 73.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 8.1e-69 264.6 179 70.9
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.1e-69 264.6 266 56.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.2e-68 261.9 198 66.7
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.9e-68 261.5 271 55.4
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 9.0e-68 261.2 208 62.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.0e-68 261.2 175 74.3
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.2e-67 260.8 186 68.8
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-67 260.4 200 65.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 3.4e-67 259.2 180 71.1
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.8e-67 258.5 232 59.9
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 7.6e-67 258.1 197 66.5
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.9e-66 255.4 211 61.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.4e-66 255.0 197 67.0
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-65 253.4 187 67.9
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.9e-65 253.4 162 76.5
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.2e-65 252.3 179 67.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 9.3e-65 251.1 173 69.9
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.3e-65 251.1 194 65.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.2e-64 250.8 170 72.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-64 250.8 179 68.7
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-64 250.0 188 66.5
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.0e-64 248.4 211 60.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.3e-63 247.3 177 67.2
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.9e-62 243.4 182 65.9
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 9.6e-62 241.1 202 63.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-61 240.0 196 61.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.2e-61 238.4 156 74.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 5.8e-59 231.9 196 59.2
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 5.8e-59 231.9 196 59.2
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.9e-59 231.1 193 60.6
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-58 230.3 185 65.9
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-58 229.6 196 59.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-58 229.2 196 59.2
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.8e-58 229.2 196 59.2
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.2e-57 226.1 196 59.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 3.2e-57 226.1 199 58.8
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.2e-57 225.7 252 49.6
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.1e-56 223.4 197 58.9
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.1e-56 223.4 197 59.9
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 5.1e-55 218.8 197 58.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.2e-53 211.8 150 70.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-52 210.7 157 65.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 9.9e-51 204.5 144 68.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 3.8e-50 202.6 187 55.6
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.9e-49 200.3 126 75.4
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.1e-48 196.8 138 73.2
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.6e-48 195.7 181 57.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.4e-44 183.3 130 72.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.5e-43 180.6 128 64.8
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.3e-42 177.6 116 73.3
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 4.9e-42 175.6 156 56.4
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-40 169.5 161 56.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.1e-39 165.6 119 68.9
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 8.7e-39 164.9 182 51.6
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.9e-38 163.7 127 65.4
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.4e-36 157.5 137 60.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 5.3e-36 155.6 117 66.7
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 4.5e-35 152.5 182 50.0
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.8e-34 149.4 152 49.3
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 4.6e-32 142.5 188 46.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.0e-26 124.8 107 59.8
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-25 120.9 93 64.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.8e-21 106.7 76 67.1
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.2e-19 101.3 109 49.5
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.5e-19 100.9 123 49.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-19 100.9 74 67.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.6e-19 100.1 97 55.7
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.9e-19 99.0 74 66.2
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 8.5e-18 95.1 72 61.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.6e-11 74.3 51 66.7
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.6e-11 73.6 166 33.1
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.2e-10 70.5 132 37.9
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 6.5e-10 68.9 149 30.9
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.9e-09 67.4 134 32.8
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.2e-09 66.6 43 72.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.2e-08 64.7 147 33.3
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 1.2e-06 58.2 133 34.6


User provided reference genes

Program Settings