Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 0.0e+00 1203.0 658 100.0
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.7e-62 243.8 398 37.7
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 3.0e-56 224.2 415 41.7
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.1e-49 201.4 425 33.4
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 2.3e-48 198.0 456 36.2
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 6.7e-48 196.4 463 33.9
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.7e-46 190.7 484 33.3
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.4e-45 188.7 461 33.8
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 9.1e-45 186.0 462 33.5
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 5.9e-44 183.3 454 30.6
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 6.5e-43 179.9 509 32.0
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.1e-42 179.1 458 33.2
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-42 178.7 476 32.6
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 5.5e-42 176.8 459 34.4
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.6e-41 174.1 458 32.3
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 4.6e-41 173.7 458 32.3
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 3.9e-40 170.6 431 34.8
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 2.0e-39 168.3 459 32.9
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 5.7e-39 166.8 462 32.5
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 1.2e-36 159.1 461 31.7
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 7.7e-36 156.4 472 30.5
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 7.7e-36 156.4 403 35.2
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.2e-35 154.8 459 31.6
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 3.8e-35 154.1 453 32.2
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.5e-34 151.4 458 31.0
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.5e-34 151.4 458 31.7
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.7e-33 147.9 493 31.0
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 2.7e-33 147.9 508 29.7
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 5.2e-32 143.7 427 32.8
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.6e-31 141.4 479 31.5
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 4.4e-31 140.6 465 30.1
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 7.4e-31 139.8 525 30.1
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 9.7e-31 139.4 520 25.2
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.3e-30 139.0 479 29.0
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 6.3e-30 136.7 454 30.6
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 4.1e-29 134.0 414 32.1
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 4.1e-29 134.0 416 32.0
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 5.3e-29 133.7 458 29.7
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 9.1e-29 132.9 351 34.2
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 9.1e-29 132.9 426 27.5
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 1.6e-28 132.1 480 30.4
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 3.5e-28 131.0 420 30.5
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 7.7e-28 129.8 383 26.9
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 2.2e-27 128.3 321 33.3
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 2.2e-27 128.3 405 30.9
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.2e-27 128.3 218 36.2
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.9e-27 127.9 253 34.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.5e-27 126.7 466 24.0
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 6.5e-27 126.7 471 29.5
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.1e-26 125.9 413 30.0
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 1.9e-26 125.2 412 30.6
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.9e-26 125.2 331 27.2
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 3.2e-26 124.4 459 29.4
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 7.2e-26 123.2 447 28.9
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 7.2e-26 123.2 320 32.5
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 7.2e-26 123.2 457 29.1
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 2.7e-25 121.3 509 28.3
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.7e-25 121.3 316 36.1
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.6e-25 120.9 451 28.2
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 3.6e-25 120.9 458 24.7
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 3.6e-25 120.9 328 33.5
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 4.7e-25 120.6 333 33.0
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 4.7e-25 120.6 317 35.0
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 8.0e-25 119.8 300 35.3
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.0e-24 119.4 144 45.1
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.4e-24 119.0 320 32.2
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 3.0e-24 117.9 402 31.1
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 3.0e-24 117.9 468 27.6
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.0e-24 117.9 310 29.0
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 4.0e-24 117.5 320 32.2
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 4.0e-24 117.5 459 28.5
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 5.2e-24 117.1 467 28.5
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.5e-23 115.5 449 28.1
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 2.0e-23 115.2 402 30.8
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 2.0e-23 115.2 324 32.1
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 3.3e-23 114.4 323 33.7
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 1.7e-22 112.1 458 28.8
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 2.8e-22 111.3 488 28.3
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 4.5e-20 104.0 460 27.2
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 4.5e-20 104.0 313 33.2
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.3e-19 102.4 498 26.3
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 8.5e-19 99.8 462 27.7
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.1e-18 99.4 320 31.2
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 5.5e-18 97.1 431 27.8
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 7.2e-18 96.7 421 28.0
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 1.2e-17 95.9 136 36.0
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.6e-17 95.5 457 26.5
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 2.7e-17 94.7 137 35.8
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 3.6e-17 94.4 137 35.8
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 8.0e-17 93.2 493 26.6
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 1.4e-16 92.4 143 33.6
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 1.8e-16 92.0 401 28.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.3e-16 91.7 460 26.5
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 3.0e-16 91.3 402 27.9
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.5e-15 89.0 342 28.7
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.0e-15 88.6 188 25.0
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 3.4e-15 87.8 124 33.1
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 3.4e-15 87.8 137 29.9
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 5.7e-15 87.0 124 33.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 5.7e-15 87.0 186 28.5
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 9.8e-15 86.3 151 37.1
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 1.3e-14 85.9 155 30.3
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 2.8e-14 84.7 463 26.1
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 4.8e-14 84.0 369 26.8
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 6.3e-14 83.6 124 33.1
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 6.3e-14 83.6 154 29.9
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 6.3e-14 83.6 458 24.7
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.1e-13 82.8 123 32.5
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.1e-13 82.8 125 34.4
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.4e-13 82.4 122 32.0
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 3.1e-13 81.3 123 31.7
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.2e-12 79.3 133 31.6
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 2.7e-12 78.2 467 25.1
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 5.9e-12 77.0 246 30.9
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 2.3e-11 75.1 202 29.7
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 5.5e-10 70.5 185 37.8
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 1.0e-08 66.2 114 38.6
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 2.3e-08 65.1 146 25.3
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.0e-08 64.3 85 36.5
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 1.2e-07 62.8 176 28.4


User provided reference genes

Program Settings