Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1342.4 693 100.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1231.9 688 90.6
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1230.3 690 90.4
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1229.9 690 90.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1223.4 686 90.8
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1219.5 685 89.8
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1218.4 686 90.2
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1216.8 687 90.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1216.8 688 90.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 688 89.8
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 691 89.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1211.8 689 88.7
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1210.7 688 89.8
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1210.3 688 89.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 688 89.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 690 88.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1208.7 691 88.9
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1208.0 690 88.3
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1208.0 690 89.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1208.0 690 89.3
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1207.6 688 89.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1207.6 690 88.3
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1205.3 717 86.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 688 88.7
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1203.3 688 89.1
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1203.0 688 89.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 693 88.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 688 88.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 686 88.9
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 688 88.7
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 685 89.2
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1194.5 690 87.7
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1194.5 690 87.7
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1194.5 690 87.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1194.5 690 87.0
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1192.6 688 88.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 692 88.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1190.3 689 86.8
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1190.3 689 87.1
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1182.5 691 87.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 688 88.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 685 87.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 685 87.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1178.3 671 89.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 689 86.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 697 86.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 690 85.1
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 690 86.5
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 690 85.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 690 85.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 689 86.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 690 87.0
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 690 86.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 714 83.8
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 691 86.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 689 86.9
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 713 84.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 694 86.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 685 84.8
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 685 84.8
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 685 85.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 686 85.1
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 690 85.9
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 84.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 705 83.8
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 685 84.5
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 685 84.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 685 85.7
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 684 85.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 688 84.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 685 84.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 686 84.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 688 84.3
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 685 84.5
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 690 85.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 708 84.0
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 693 83.8
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 690 84.2
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 692 85.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 695 82.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 735 79.6
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 687 83.1
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 686 83.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 668 86.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 687 82.7
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 685 83.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 686 83.5
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 692 81.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 767 76.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 700 81.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 690 81.3
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 727 78.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 735 77.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1088.9 662 82.9
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1088.6 692 79.0
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1082.8 666 83.8
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 6.1e-310 1067.0 687 78.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 7.5e-308 1060.1 714 76.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 8.0e-302 1040.0 736 72.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.2e-290 1001.5 631 82.4
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 7.8e-289 996.9 617 81.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.6e-286 989.2 591 84.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.8e-284 980.7 689 71.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.8e-284 980.7 689 71.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 6.2e-278 960.7 682 69.1
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.9e-277 956.8 584 82.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.6e-273 946.0 687 69.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.7e-272 942.6 683 74.2
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.0e-272 941.8 691 68.9
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.9e-264 914.8 566 81.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.3e-263 911.4 554 83.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.6e-263 911.0 589 79.3
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.5e-257 891.7 499 90.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 4.5e-252 874.8 675 69.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-238 829.3 480 87.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.8e-230 801.6 681 59.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.2e-219 766.1 675 56.9
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.2e-206 723.0 423 84.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.6e-204 716.1 452 83.0
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.5e-156 556.2 328 81.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.2e-153 547.7 729 43.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.5e-146 523.5 755 38.4
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.6e-137 494.2 280 88.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.2e-127 461.5 273 83.5
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.5e-127 461.1 269 87.7
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.9e-122 444.1 359 63.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 9.0e-120 435.3 743 37.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-115 420.6 237 88.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.5e-114 417.2 233 87.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.6e-113 414.5 253 82.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.5e-106 390.6 261 78.9
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.2e-101 372.5 240 81.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.6e-82 310.8 182 81.9
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 8.5e-78 295.8 215 70.2
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.4e-75 288.5 193 80.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.7e-73 280.4 148 89.9
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.3e-70 271.2 195 71.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.7e-60 236.9 192 70.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-58 232.3 155 65.2
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.4e-56 224.6 164 72.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.0e-54 217.6 223 57.4
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 3.9e-54 217.2 156 69.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.1e-53 215.7 180 66.7
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.4e-51 208.8 489 29.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-49 202.2 122 85.2
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.2e-47 195.7 114 87.7
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 3.1e-43 181.0 104 86.5
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.4e-42 177.2 111 85.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.5e-37 161.4 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-31 141.7 94 74.5
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-29 136.0 94 72.3
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-29 136.0 94 72.3
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.1e-27 127.9 88 73.9
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.0e-27 127.5 72 86.1
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 9.0e-27 126.3 136 53.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.4e-24 117.1 74 77.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.1e-23 115.2 95 63.2
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 9.6e-21 106.3 77 70.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 9.6e-21 106.3 61 85.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.3e-20 105.9 69 71.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.8e-20 104.8 57 87.7
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 6.2e-20 103.6 104 54.8
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.0e-19 100.9 102 55.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.1e-15 88.6 65 70.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.1e-12 78.6 78 52.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 8.1e-12 76.6 60 66.7
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.0e-11 73.2 43 76.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.4e-10 71.2 40 82.5
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 3.8e-09 67.8 41 75.6


User provided reference genes

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