Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.8e-63 245.7 122 100.0
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 6.6e-50 200.7 128 82.0
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.3e-45 186.4 128 75.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-44 183.3 128 71.9
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.9e-44 182.6 117 75.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 3.2e-44 181.8 124 75.0
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 4.1e-44 181.4 128 71.1
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.1e-44 181.4 128 71.1
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 3.5e-43 178.3 128 71.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 6.0e-43 177.6 128 71.1
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 6.0e-43 177.6 128 70.3
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 7.8e-43 177.2 128 71.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 7.8e-43 177.2 128 70.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.0e-42 176.8 117 74.4
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.3e-42 176.4 117 75.2
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.3e-42 176.4 117 75.2
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.7e-42 176.0 128 71.1
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.0e-42 175.3 129 69.0
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.9e-42 174.9 128 69.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 3.9e-42 174.9 128 69.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.9e-42 174.9 116 73.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 5.1e-42 174.5 128 69.5
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.1e-42 174.5 128 68.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 6.6e-42 174.1 127 70.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.9e-41 172.6 128 70.3
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.3e-41 171.4 128 68.8
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 5.6e-41 171.0 128 68.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.3e-41 170.6 122 70.5
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 9.5e-41 170.2 128 69.5
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.2e-40 169.9 128 68.8
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.6e-40 169.5 125 68.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.6e-40 169.5 126 69.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.6e-40 169.5 126 69.8
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.6e-40 169.5 127 64.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.1e-40 169.1 128 68.8
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.8e-40 168.7 117 68.4
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.6e-40 168.3 128 67.2
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.6e-40 168.3 128 68.8
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.6e-40 168.3 165 58.2
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.6e-40 168.3 165 58.2
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.7e-40 167.9 128 68.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.2e-40 167.5 128 67.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.2e-40 167.5 128 67.2
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 8.1e-40 167.2 117 72.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.4e-39 166.4 128 66.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.1e-39 165.2 128 66.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 4.0e-39 164.9 128 68.8
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 5.2e-39 164.5 128 67.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 5.2e-39 164.5 142 61.3
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 6.8e-39 164.1 117 69.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.8e-39 164.1 128 66.4
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.2e-38 163.3 128 68.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.5e-38 162.9 128 66.4
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.0e-38 162.5 128 66.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.6e-38 162.2 128 66.4
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.4e-38 161.8 146 60.3
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-38 161.8 128 67.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.4e-38 161.8 128 67.2
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.8e-38 161.0 127 66.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 9.9e-38 160.2 128 66.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-37 159.5 128 65.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.9e-37 158.7 128 65.6
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.9e-37 157.9 128 64.1
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.4e-37 157.5 128 64.8
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 8.3e-37 157.1 112 68.8
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 8.3e-37 157.1 128 64.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.1e-36 156.8 117 65.8
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.1e-36 156.8 128 63.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.9e-36 156.0 128 64.8
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.1e-36 154.8 117 65.0
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.1e-36 154.8 117 65.0
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.2e-35 153.3 117 66.7
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.2e-35 153.3 117 66.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.1e-35 152.5 117 65.8
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.1e-35 152.5 128 65.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.7e-35 152.1 117 65.8
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 2.7e-35 152.1 117 64.1
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.7e-35 152.1 118 61.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-35 152.1 117 64.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 4.6e-35 151.4 117 65.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.6e-35 151.4 129 65.1
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 4.6e-35 151.4 128 64.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.6e-35 151.4 148 56.8
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 6.0e-35 151.0 128 62.5
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 6.0e-35 151.0 118 61.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 7.8e-35 150.6 117 65.8
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 7.8e-35 150.6 117 65.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-34 150.2 128 61.7
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.3e-34 149.8 112 67.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.3e-34 149.1 112 63.4
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.0e-34 148.7 116 62.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-33 146.7 119 63.0
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.9e-33 146.0 118 63.6
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.5e-33 145.6 112 66.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 5.6e-33 144.4 128 60.2
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.6e-33 144.4 127 58.3
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.3e-33 144.1 128 58.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 7.3e-33 144.1 116 61.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 2.1e-32 142.5 121 58.7
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.1e-32 142.5 121 58.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.1e-32 142.5 128 58.6
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-32 142.1 117 59.8
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-31 139.4 117 58.1
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.8e-31 139.4 121 57.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.4e-31 139.0 117 56.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 2.4e-31 139.0 117 59.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.4e-31 139.0 157 52.9
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.1e-31 138.7 120 59.2
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 4.0e-31 138.3 170 49.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 5.2e-31 137.9 117 57.3
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 5.2e-31 137.9 121 56.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 6.8e-31 137.5 115 61.7
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 8.9e-31 137.1 121 55.4
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 8.9e-31 137.1 121 55.4
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 8.9e-31 137.1 121 55.4
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 8.9e-31 137.1 115 60.9
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 8.9e-31 137.1 117 57.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.5e-30 136.3 117 58.1
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.6e-30 135.6 117 54.7
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.9e-30 133.7 114 57.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-29 133.3 117 56.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.7e-29 132.9 128 53.9
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-29 132.9 117 55.6
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 4.9e-29 131.3 128 52.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.4e-28 129.8 106 59.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-28 128.3 114 54.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-27 126.7 99 59.6
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-27 124.8 117 54.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.3e-26 122.5 120 52.5
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-26 122.1 117 52.1
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-26 121.3 123 51.2
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 3.3e-25 118.6 118 47.5
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.1e-24 115.9 116 47.4
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.5e-22 109.8 115 50.4
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.0e-22 109.4 118 44.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.3e-21 106.7 117 46.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-21 106.7 120 49.2
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-21 106.7 89 59.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.9e-20 102.8 84 61.9
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.0e-18 97.1 115 43.5
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.7e-18 96.3 84 60.7
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.6e-18 94.4 82 59.8
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 9.6e-17 90.5 107 39.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.0e-14 82.8 77 57.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-14 82.8 78 56.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 5.8e-14 81.3 82 48.8
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.4e-12 75.9 63 55.6
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-11 73.6 64 54.7
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.3e-10 70.1 64 56.2
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.3e-10 70.1 46 78.3
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.8e-10 69.7 45 80.0
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.3e-10 69.3 45 80.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.9e-07 57.8 47 63.8


User provided reference genes

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