Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 4.0e-65 251.1 115 100.0
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 92.2
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 93.0
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 92.2
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 90.4
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 93.0
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 93.0
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 93.0
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 93.0
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 93.0
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.7e-60 235.7 114 90.4
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 92.2
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 91.3
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 91.3
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 90.4
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 88.7
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.8
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 89.6
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 90.4
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 88.7
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 90.4
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 89.6
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.8
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 86.1
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 89.6
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 89.6
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 89.6
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 88.7
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 89.6
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 89.6
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 88.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 89.6
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 88.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 89.6
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 88.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.0
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 87.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 89.6
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 88.7
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 6.2e-58 227.3 114 87.7
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.4e-57 226.1 135 78.5
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 86.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 86.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 86.1
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 87.0
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 86.1
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 86.1
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 134 79.9
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 85.2
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 85.2
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 85.2
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 86.1
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 84.3
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 84.3
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 84.3
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 84.3
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 85.2
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 85.2
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 3.4e-56 221.5 115 84.3
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 86.1
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 83.5
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.7e-55 219.2 115 82.6
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.9e-55 217.6 115 86.1
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 5.4e-54 214.2 112 86.6
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.4e-54 214.2 112 86.6
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.6e-53 212.6 115 77.4
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.7e-53 211.8 105 89.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 2.3e-52 208.8 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 2.3e-52 208.8 113 80.5
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 5.1e-52 207.6 112 81.2
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 8.7e-52 206.8 105 85.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 8.7e-52 206.8 105 85.7
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.1e-51 206.5 115 80.0
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.9e-51 205.7 128 77.3
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.6e-51 204.1 115 76.5
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 9.6e-51 203.4 114 76.3
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 9.6e-51 203.4 105 84.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.3e-50 203.0 115 78.3
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.8e-50 201.1 105 83.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 8.1e-50 200.3 105 82.9
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-49 199.9 112 76.8
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.4e-49 199.5 112 76.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.4e-49 199.5 112 76.8
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.8e-49 199.1 105 82.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 3.1e-49 198.4 115 73.9
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 73.9
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 5.3e-49 197.6 114 73.7
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 1.3e-47 193.0 98 89.8
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.7e-47 192.6 115 73.9
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.2e-45 186.4 130 67.7
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.2e-45 186.4 115 70.4
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.5e-45 184.9 114 70.2
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.5e-43 178.7 114 68.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.3e-43 178.3 115 67.8
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 8.1e-42 173.7 180 54.4
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.1e-41 173.3 88 87.5
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.4e-41 172.9 115 71.3
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.0e-40 169.1 88 85.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.6e-40 168.7 114 67.5
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 9.9e-40 166.8 88 86.4
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-38 163.3 115 58.3
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.9e-38 162.5 93 77.4
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.9e-38 162.5 90 81.1
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.6e-37 159.5 84 85.7
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 4.6e-37 157.9 80 85.0
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 7.9e-37 157.1 80 85.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.0e-36 156.8 94 75.5
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.0e-36 155.2 80 85.0
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.1e-35 153.3 79 84.8
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.5e-35 152.9 81 81.5
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.9e-35 152.5 82 80.5
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 9.6e-35 150.2 84 81.0
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 2.1e-34 149.1 80 80.0
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.1e-33 146.7 81 76.5
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.4e-33 146.4 80 77.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 4.0e-33 144.8 77 85.7
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.2e-32 143.3 81 76.5
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.0e-31 140.2 110 55.5
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 2.3e-28 129.0 111 50.5
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.3e-25 117.9 61 83.6
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 4.5e-24 114.8 64 78.1
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 7.2e-22 107.5 97 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 1.2e-21 106.7 114 44.7
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.7e-21 105.5 71 67.6
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 7.9e-21 104.0 113 45.1
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.9e-20 101.7 113 48.7
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 8.7e-20 100.5 56 76.8
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-18 95.5 62 71.0
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 8.2e-18 94.0 54 79.6
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.3e-15 86.7 116 37.1
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 3.8e-15 85.1 64 53.1
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.5e-14 82.4 64 60.9
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 8.8e-12 73.9 104 38.5
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 7.4e-11 70.9 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.5e-08 61.6 37 73.0
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 6.5e-07 57.8 112 27.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.4e-06 56.6 112 28.6
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.9e-06 56.2 113 26.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.5e-06 55.8 112 29.5
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 4.2e-06 55.1 112 33.0


User provided reference genes

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