Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.2e-116 421.4 214 100.0
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.2e-108 395.2 212 92.9
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 5.5e-108 394.4 212 92.5
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.6e-105 383.6 212 89.2
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 4.8e-104 381.3 212 90.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.3e-103 377.9 212 87.7
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.6e-102 375.6 212 87.3
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.6e-102 375.6 212 86.8
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 7.6e-102 374.0 211 86.7
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-101 373.2 212 86.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-101 373.2 212 86.3
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.9e-101 372.1 212 86.3
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 4.9e-101 371.3 212 85.8
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 4.9e-101 371.3 212 85.8
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 8.4e-101 370.5 212 86.8
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 8.4e-101 370.5 212 86.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.1e-100 370.2 212 85.4
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.4e-100 369.8 212 86.8
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.9e-100 369.4 212 86.8
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.9e-100 369.4 212 87.3
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.5e-100 369.0 212 86.3
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 7.1e-100 367.5 212 85.4
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.2e-99 366.7 212 87.3
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.2e-99 366.7 212 85.4
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.2e-99 366.7 211 85.3
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.6e-99 366.3 211 86.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.5e-99 365.2 211 86.3
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 7.9e-99 364.0 212 84.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 7.9e-99 364.0 212 84.0
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 7.9e-99 364.0 212 84.9
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.8e-98 362.8 211 84.4
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.3e-98 362.5 212 83.5
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.0e-98 362.1 212 84.4
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.9e-98 361.7 212 82.5
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 6.7e-98 360.9 212 82.5
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.7e-98 360.5 211 85.3
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 8.7e-98 360.5 212 84.0
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.1e-97 360.1 212 82.1
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-97 360.1 212 85.4
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.9e-97 359.4 212 84.0
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.9e-97 359.4 211 84.8
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.9e-97 359.4 213 84.5
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.5e-97 359.0 213 84.5
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 5.7e-97 357.8 211 83.9
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-97 357.5 211 84.8
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 9.6e-97 357.1 211 84.4
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.8e-96 355.5 212 83.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.8e-96 354.8 211 83.9
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 6.3e-96 354.4 212 83.0
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.4e-95 353.2 214 79.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.4e-95 352.4 211 82.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.4e-95 352.4 211 82.5
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.1e-95 352.1 211 83.9
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 4.1e-95 351.7 212 80.7
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 9.0e-95 350.5 212 81.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.0e-94 349.4 245 74.7
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.6e-94 349.0 212 81.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.9e-94 347.8 211 82.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.9e-94 347.8 211 80.6
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.0e-93 347.1 212 79.7
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 3.8e-93 345.1 218 79.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 8.4e-93 344.0 212 80.2
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.4e-92 343.2 211 79.1
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.5e-92 342.4 212 79.7
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.5e-92 341.3 211 79.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.1e-91 339.3 211 79.6
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.7e-91 339.0 211 80.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.1e-91 337.8 212 80.2
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 6.1e-91 337.8 214 78.0
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.1e-91 337.8 211 77.7
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.0e-90 337.0 198 84.8
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.0e-90 337.0 211 78.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.8e-90 336.3 212 78.3
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.8e-90 336.3 231 74.0
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.3e-90 335.9 212 78.8
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.0e-90 335.5 211 80.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 5.1e-90 334.7 211 81.5
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.1e-89 333.6 212 79.2
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.5e-89 333.2 211 80.6
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.5e-89 333.2 211 80.6
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.5e-89 333.2 211 80.6
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.5e-89 333.2 211 76.8
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.3e-89 331.6 208 80.3
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.3e-89 331.6 266 66.5
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 7.4e-89 330.9 211 80.1
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 7.4e-89 330.9 212 78.3
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.2e-88 329.3 312 59.3
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.8e-88 328.9 211 78.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.8e-88 328.9 211 78.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.7e-88 328.6 212 76.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.8e-88 328.2 211 79.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.1e-87 327.0 212 76.9
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.2e-86 323.6 211 78.7
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.2e-86 323.6 180 88.9
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.6e-86 322.4 211 76.3
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 4.5e-86 321.6 237 69.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.0e-85 320.5 212 76.9
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.2e-85 319.3 211 75.4
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.8e-85 318.5 198 79.3
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 6.1e-83 311.2 174 86.8
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 2.3e-82 309.3 190 82.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.2e-80 302.8 255 63.1
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.7e-80 302.0 214 72.0
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 9.1e-79 297.4 184 78.3
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.9e-77 292.4 184 78.3
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.6e-75 285.4 212 70.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.1e-71 272.3 211 69.2
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.7e-69 266.5 212 63.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.6e-67 260.0 209 58.9
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 3.6e-67 258.8 143 86.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.6e-67 258.8 148 83.8
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 5.2e-66 255.0 207 58.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.0e-65 253.1 150 83.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.2e-61 239.6 139 81.3
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.0e-57 226.5 140 80.7
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.0e-57 226.5 140 80.7
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 2.2e-56 223.0 196 56.1
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.1e-55 220.7 117 88.9
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.7e-54 216.1 182 64.8
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 5.5e-52 208.4 118 88.1
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-50 204.1 119 87.4
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.0e-50 202.2 126 80.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.2e-50 201.8 118 87.3
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 8.8e-50 201.1 131 75.6
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.5e-49 200.3 207 47.3
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.3e-48 197.2 118 81.4
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 7.0e-47 191.4 107 85.0
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 3.3e-44 182.6 143 66.4
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.0e-42 177.6 128 74.2
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 9.8e-41 171.0 97 82.5
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 2.4e-39 166.4 118 72.9
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.3e-37 159.8 207 43.0
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.0e-34 149.1 100 76.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 8.9e-34 147.9 152 54.6
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 9.2e-31 137.9 121 63.6
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 1.3e-29 134.0 85 72.9
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 5.0e-29 132.1 182 45.1
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 5.6e-28 128.6 80 77.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-26 124.4 100 71.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-26 124.4 89 66.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.0e-25 120.2 106 60.4
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.3e-24 117.5 91 62.6
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 8.3e-24 114.8 71 83.1
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.4e-23 113.2 221 33.9
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 5.2e-18 95.5 183 30.6
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.2e-17 94.4 62 61.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-17 94.0 50 84.0
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 5.4e-15 85.5 162 39.5
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.4e-15 85.5 62 67.7
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.5e-12 76.6 43 86.0
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.6e-09 66.6 39 79.5
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 4.9e-08 62.4 33 81.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 1.4e-07 60.8 30 93.3


User provided reference genes

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