Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G038900 Manihot esculenta HOM05D006183 ORTHO05D007844 0.0e+00 1169.8 607 100.0
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 6.0e-277 957.2 646 77.9
CsaV3_3G028460 Cucumis sativus L. HOM05D006183 ORTHO05D007844 5.8e-272 940.6 649 77.5
MELO3C012834.2 Cucumis melo HOM05D006183 ORTHO05D007844 1.7e-271 939.1 653 76.6
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 6.6e-268 927.2 653 76.1
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 1.9e-267 925.6 653 75.5
Sabra14G0143600 Salix brachista HOM05D006183 ORTHO05D007844 2.5e-267 925.2 646 77.4
Thecc.01G248600 Theobroma cacao HOM05D006183 ORTHO05D007844 1.2e-266 922.9 647 76.7
vmacro02713 Vaccinium macrocarpon HOM05D006183 ORTHO05D007844 2.1e-266 922.2 656 76.1
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 2.8e-266 921.8 648 76.7
Rhsim13G0040400 Rhododendron simsii HOM05D006183 ORTHO05D007844 8.1e-266 920.2 655 74.2
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 1.1e-265 919.8 639 75.6
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 1.4e-265 919.5 647 75.9
ClCG07G001450 Citrullus lanatus HOM05D006183 ORTHO05D007844 1.2e-264 916.4 665 74.4
PGR044G1356 Punica granatum HOM05D006183 ORTHO05D007844 2.0e-264 915.6 650 72.9
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 2.6e-264 915.2 651 76.3
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 1.3e-263 912.9 652 74.5
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 3.8e-263 911.4 651 71.7
Glyma.19G169500 Glycine max HOM05D006183 ORTHO05D007844 6.4e-263 910.6 639 74.8
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 1.4e-262 909.4 656 73.3
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 2.4e-262 908.7 659 74.1
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 2.4e-262 908.7 658 75.5
Dinv43057 Davidia involucrata HOM05D006183 ORTHO05D007844 7.1e-262 907.1 711 70.5
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 1.7e-260 902.5 655 74.0
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 3.0e-260 901.7 645 74.9
Ca_08753_v3 Cicer arietinum L. HOM05D006183 ORTHO05D007844 6.6e-260 900.6 639 71.7
Prupe.8G213600 Prunus persica HOM05D006183 ORTHO05D007844 5.6e-259 897.5 640 72.8
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 2.1e-258 895.6 668 69.9
Medtr7g098900 Medicago truncatula HOM05D006183 ORTHO05D007844 2.1e-258 895.6 642 72.1
RcHm_v2.0_Chr6g0286091 Rosa chinensis HOM05D006183 ORTHO05D007844 2.8e-258 895.2 645 73.2
CSS0020724 Camellia sinensis var. sinensis HOM05D006183 ORTHO05D007844 4.8e-258 894.4 674 72.3
Ciclev10019299m.g Citrus clementina HOM05D006183 ORTHO05D007844 6.2e-258 894.0 647 73.7
Solyc06g008110.4 Solanum lycopersicum HOM05D006183 ORTHO05D007844 6.2e-258 894.0 628 73.9
TPR.G20058 Trifolium pratense HOM05D006183 ORTHO05D007844 8.1e-258 893.6 640 74.4
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 1.8e-257 892.5 651 74.5
TAR636G3003 Trochodendron aralioides HOM05D006183 ORTHO05D007844 5.3e-257 891.0 671 72.9
FvH4_2g20290 Fragaria vesca HOM05D006183 ORTHO05D007844 9.0e-257 890.2 643 73.6
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 9.0e-257 890.2 643 73.6
Lj1A75T45 Lonicera japonica HOM05D006183 ORTHO05D007844 1.2e-256 889.8 660 72.6
Nitab4.5_0009671g0010 Nicotiana tabacum HOM05D006183 ORTHO05D007844 1.2e-256 889.8 653 71.5
Sed0027453 Sechium edule HOM05D006183 ORTHO05D007844 2.0e-256 889.0 656 73.6
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 3.4e-256 888.3 641 73.5
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 3.4e-256 888.3 687 69.3
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 4.5e-256 887.9 651 72.0
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 9.9e-256 886.7 703 70.1
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 2.2e-255 885.6 653 69.5
Nitab4.5_0000326g0320 Nicotiana tabacum HOM05D006183 ORTHO05D007844 2.2e-255 885.6 669 68.8
PGSC0003DMG400014711 Solanum tuberosum HOM05D006183 ORTHO05D007844 2.2e-255 885.6 671 70.0
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 3.8e-255 884.8 646 71.2
Sopen06g002920 Solanum pennellii HOM05D006183 ORTHO05D007844 4.9e-255 884.4 658 70.7
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 2.4e-254 882.1 650 69.8
Psat3g051320 Pisum sativum HOM05D006183 ORTHO05D007844 2.4e-254 882.1 639 70.3
Eucgr.K01415 Eucalyptus grandis HOM05D006183 ORTHO05D007844 1.6e-253 879.4 679 72.3
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 2.1e-253 879.0 639 73.1
EL10Ac7g17706 Beta vulgaris HOM05D006183 ORTHO05D007844 6.0e-253 877.5 651 70.4
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 2.3e-252 875.5 659 68.1
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 1.5e-251 872.8 638 75.1
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 3.3e-251 871.7 664 69.6
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 3.8e-247 858.2 648 68.4
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 8.4e-247 857.1 657 71.1
PSO210G4577 Papaver somniferum HOM05D006183 ORTHO05D007844 5.5e-246 854.4 637 71.0
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 1.3e-244 849.7 660 69.4
Oeu015440.1 Olea europaea HOM05D006183 ORTHO05D007844 3.9e-244 848.2 703 66.7
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 1.1e-243 846.7 680 67.9
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 7.4e-243 844.0 746 63.0
Lalb_Chr20g0113511 Lupinus albus HOM05D006183 ORTHO05D007844 2.8e-242 842.0 636 70.9
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 8.2e-242 840.5 641 66.8
Peaxi162Scf00499g00067 Petunia axillaris HOM05D006183 ORTHO05D007844 1.4e-241 839.7 642 71.8
HanXRQChr03g0066991 Helianthus annuus HOM05D006183 ORTHO05D007844 4.2e-238 828.2 638 66.6
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 1.2e-237 826.6 652 68.4
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 2.7e-237 825.5 663 67.1
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 5.1e-236 821.2 639 70.4
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 5.1e-236 821.2 639 70.9
THA.LOC104814536 Tarenaya hassleriana HOM05D006183 ORTHO05D007844 4.3e-235 818.1 671 66.5
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 1.1e-233 813.5 638 69.7
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 3.1e-233 812.0 666 65.2
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 6.9e-233 810.8 642 69.3
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 6.9e-233 810.8 642 69.3
CARHR110860 Cardamine hirsuta HOM05D006183 ORTHO05D007844 5.9e-232 807.7 659 67.7
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 3.8e-231 805.1 658 66.6
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 3.8e-231 805.1 651 64.4
AT2G20330 Arabidopsis thaliana HOM05D006183 ORTHO05D007844 8.5e-231 803.9 670 64.3
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 1.4e-230 803.1 830 55.3
SEGI_33423 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 1.2e-229 800.0 688 61.6
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 6.1e-229 797.7 637 68.6
Carub.0003s3467 Capsella rubella HOM05D006183 ORTHO05D007844 3.0e-228 795.4 663 66.8
Aa31LG8G17320 Aethionema arabicum HOM05D006183 ORTHO05D007844 8.2e-226 787.3 660 62.6
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 2.6e-224 782.3 630 65.6
COL.COLO4_20954 Corchorus olitorius HOM05D006183 ORTHO05D007844 1.3e-223 780.0 650 65.2
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 1.7e-223 779.6 482 76.1
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 1.1e-222 776.9 483 76.0
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 3.6e-221 771.9 608 67.8
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 1.3e-218 763.5 585 66.7
FAN27G0957 Fragaria x ananassa HOM05D006183 ORTHO05D007844 2.2e-215 752.7 443 80.6
Actinidia37559 Actinidia chinensis HOM05D006183 ORTHO05D007844 9.4e-214 747.3 546 74.9
AagrBONN_evm.TU.Sc2ySwM_228.230 Anthoceros agrestis HOM05D006183 ORTHO05D007844 5.2e-212 741.5 639 60.4
CBR_g29722 Chara braunii HOM05D006183 ORTHO05D007844 3.7e-178 629.0 500 61.6
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 5.0e-175 618.6 646 54.6
SMO117G0187 Selaginella moellendorffii HOM05D006183 ORTHO05D007844 1.6e-173 613.6 642 53.0
Mapoly0020s0160 Marchantia polymorpha HOM05D006183 ORTHO05D007844 8.0e-173 611.3 658 51.8
Pp3c3_26410 Physcomitrium patens HOM05D006183 ORTHO05D007844 6.8e-172 608.2 664 52.7
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 3.1e-148 529.6 416 68.8
SEGI_26680 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 2.4e-145 520.0 537 54.4
MD05G1186900 Malus domestica HOM05D006183 ORTHO05D007844 4.8e-141 505.8 554 52.9
unitig_22.g6309 Utricularia gibba HOM05D006183 ORTHO05D007844 2.1e-112 410.6 398 56.3
Cre04.g217750 Chlamydomonas reinhardtii HOM05D006183 ORTHO05D007844 1.4e-108 397.9 513 42.7
MCO16G174 Micromonas commoda HOM05D006183 ORTHO05D007844 2.6e-107 393.7 495 43.6
BcaNung04798 Brassica carinata HOM05D006183 ORTHO05D007844 2.5e-97 360.5 286 64.0
C09p15190 Brassica napus HOM05D006183 ORTHO05D007844 2.5e-97 360.5 286 64.0
BolC9t54425H Brassica oleracea HOM05D006183 ORTHO05D007844 2.5e-97 360.5 286 64.0
Rhsim08G0025400 Rhododendron simsii HOM05D006183 ORTHO05D007844 5.2e-95 352.8 625 40.0
AagrBONN_evm.TU.Sc2ySwM_117.1688 Anthoceros agrestis HOM05D006183 ORTHO05D007844 1.0e-74 285.4 166 80.7
SHI26811 Sapria himalayana HOM05D006183 ORTHO05D007844 9.5e-57 225.7 328 43.3
PRCOL_00006356 Prasinoderma coloniale HOM05D006183 ORTHO05D007844 1.1e-55 222.2 522 32.4
Cfa024676 Carpinus fangiana HOM05D006183 ORTHO05D007844 4.1e-52 210.3 481 31.2
unitig_22.g6310 Utricularia gibba HOM05D006183 ORTHO05D007844 2.7e-51 207.6 109 86.2
AagrBONN_evm.TU.Sc2ySwM_117.1686 Anthoceros agrestis HOM05D006183 ORTHO05D007844 3.1e-39 167.5 106 74.5
RcHm_v2.0_Chr6g0286201 Rosa chinensis HOM05D006183 ORTHO05D007844 7.9e-27 126.3 71 81.7
Oeu052089.1 Olea europaea HOM05D000700 ORTHO05D000397 7.6e-14 83.2 123 45.5
Dinv36951 Davidia involucrata HOM05D006183 ORTHO05D007844 8.4e-13 79.7 47 76.6
HanXRQChr13g0404811 Helianthus annuus HOM05D006183 ORTHO05D007844 9.3e-12 76.3 60 56.7
QL09p042264 Quercus lobata HOM05D006183 ORTHO05D007844 9.3e-12 76.3 101 48.5
HanXRQChr14g0442591 Helianthus annuus HOM05D006183 ORTHO05D007844 1.6e-11 75.5 60 55.0
BcaB07g31601 Brassica carinata HOM05D006183 ORTHO05D007844 3.0e-10 71.2 98 41.8
HPP92_028272 Vanilla planifolia HOM05D006183 ORTHO05D007844 6.7e-10 70.1 40 75.0
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 2.5e-09 68.2 248 25.0
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.1e-08 65.1 189 29.6
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.2e-08 63.2 190 23.7
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 2.4e-07 61.6 110 30.9
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 3.1e-07 61.2 188 29.3
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 6.9e-07 60.1 223 24.7
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.2e-06 59.3 152 28.3
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.2e-06 59.3 143 25.2
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.2e-06 59.3 224 26.3
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 2.0e-06 58.5 275 25.1
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 2.6e-06 58.2 145 29.0
Thhalv10000916m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 3.4e-06 57.8 234 26.1
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 5.9e-06 57.0 223 23.3
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 7.6e-06 56.6 136 29.4
BcaC06g31305 Brassica carinata HOM05D000992 ORTHO05D001928 7.6e-06 56.6 239 24.3
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 7.6e-06 56.6 241 24.1
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 7.6e-06 56.6 143 35.0
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 1.0e-05 56.2 124 29.8


User provided reference genes

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