Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 2189.8 1090 100.0
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1873.6 1092 85.0
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1863.6 1098 84.2
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1798.1 1088 81.2
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1792.3 1086 80.9
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1779.2 1101 80.2
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1778.5 1091 80.6
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1777.7 1090 79.7
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1776.5 1090 78.7
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1765.7 1106 78.7
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1753.8 1092 78.6
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1752.3 1116 77.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1741.5 1116 77.4
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1735.3 1092 78.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1697.9 1094 78.0
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1691.8 1091 75.4
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1691.0 1094 77.1
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1691.0 1001 82.8
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1678.3 1088 77.1
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1666.7 1088 75.7
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1659.4 1100 75.6
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1655.6 1089 75.2
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1644.8 1089 74.3
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1642.5 1089 75.6
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1640.6 1089 74.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1637.5 1089 74.9
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1636.7 1089 74.4
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1635.2 1093 74.1
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1633.6 1089 74.9
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1633.2 1089 74.1
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1630.5 1089 74.5
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1629.0 1137 71.9
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1626.7 1098 73.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1625.5 1086 74.1
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1624.0 1091 75.0
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1620.5 1089 74.5
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1620.1 1102 73.3
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1618.2 1099 74.1
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1617.8 1106 73.0
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1615.9 1096 73.6
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1607.0 1127 72.1
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1603.6 1193 70.2
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1602.4 1087 74.7
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1597.8 1102 72.1
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1597.0 1091 72.5
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1596.6 1046 75.4
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1587.8 1087 73.4
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1582.4 1153 70.0
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1582.4 1087 73.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1581.2 1144 71.1
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1581.2 1091 73.5
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1580.8 1087 72.9
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1577.8 1116 70.8
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1575.1 1072 73.5
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1572.0 1090 71.6
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1564.7 1133 70.2
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1563.5 1118 70.1
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1562.7 1086 70.7
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1546.9 1056 72.3
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1542.7 1056 72.2
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1540.8 1024 74.3
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1529.2 1081 71.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1526.9 1080 71.3
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1521.1 1091 70.6
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1517.7 1083 69.4
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1513.8 1088 69.4
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1513.0 1093 69.5
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1509.2 1087 71.6
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1502.6 1098 68.8
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1499.6 1094 68.8
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1490.7 1210 63.1
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1486.9 1179 65.6
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1478.8 1105 68.5
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1476.1 870 81.8
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1473.0 870 81.6
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1460.7 1092 68.0
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1436.0 1092 67.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1430.2 1094 67.7
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1403.3 868 78.6
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1402.9 866 79.1
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1400.6 1090 64.7
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1393.6 848 80.1
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1361.3 821 81.4
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1358.6 860 76.7
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1342.0 1014 68.5
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1340.9 1005 68.6
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1338.9 1088 62.6
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1333.5 935 71.0
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1333.5 870 75.4
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1326.2 1215 58.0
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1317.4 1098 61.7
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1313.9 873 74.5
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1302.3 1089 62.5
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1297.0 1047 63.4
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1291.9 829 74.9
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1194.1 1068 58.1
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1170.6 867 67.7
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 0.0e+00 1127.1 700 79.4
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 0.0e+00 1105.9 902 63.2
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 4.2e-281 971.8 645 74.0
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.1e-276 957.2 977 50.7
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.7e-274 949.9 598 77.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 5.0e-274 948.3 1124 47.3
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.3e-263 912.9 969 49.4
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 7.0e-260 901.4 714 64.8
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 7.8e-227 791.6 498 78.9
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 9.5e-225 784.6 953 45.5
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 7.6e-222 775.0 538 74.0
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 5.7e-169 599.4 473 65.1
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 5.3e-167 592.8 405 75.1
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.4e-153 546.6 405 69.9
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.6e-150 538.1 1075 34.5
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.8e-143 514.6 320 76.9
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.6e-121 441.0 389 57.8
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 5.6e-100 370.2 245 76.3
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.1e-79 302.8 215 69.3
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.1e-77 293.9 203 74.4
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.3e-75 289.3 296 53.0
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.5e-72 276.9 233 63.5
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 5.3e-66 257.3 215 63.7
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 2.9e-64 251.5 174 70.7
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.3e-61 241.9 160 73.8
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-58 232.6 174 71.3
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 2.4e-58 231.9 214 60.3
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 7.7e-57 226.9 174 67.8
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-52 212.6 181 66.3
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.9e-48 198.4 144 68.1
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 4.7e-46 191.0 154 62.3
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 4.4e-44 184.5 177 59.9
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 5.7e-44 184.1 188 54.8
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 1.4e-42 179.5 181 54.1
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 7.0e-42 177.2 176 52.8
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.6e-41 176.0 166 55.4
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.7e-40 172.6 212 46.7
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 7.2e-39 167.2 95 78.9
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 6.7e-37 160.6 84 90.5
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 1.4e-34 152.9 143 59.4
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.1e-34 151.8 100 73.0
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-33 149.8 100 72.0
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 1.2e-33 149.8 99 73.7
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 6.5e-32 144.1 95 76.8
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.8e-29 136.0 89 69.7
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 8.3e-27 127.1 171 45.0
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 2.9e-24 118.6 90 67.8
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 9.5e-23 113.6 538 24.5
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.4e-21 109.8 424 28.3
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-21 108.6 100 57.0
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 5.2e-21 107.8 339 26.3
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.5e-20 106.3 143 44.8
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 5.7e-20 104.4 103 59.2
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 9.2e-18 97.1 93 51.6
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 7.8e-17 94.0 63 73.0
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 2.9e-16 92.0 73 61.6
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.9e-15 89.4 75 60.0
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.3e-15 88.6 55 76.4
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.6e-14 85.1 54 72.2
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 8.0e-14 84.0 55 70.9
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.8e-13 82.8 51 76.5
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 3.4e-12 78.6 55 67.3
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 8.3e-11 73.9 63 55.6
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.4e-10 72.4 41 80.5
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.4e-10 72.4 50 66.0
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 4.1e-10 71.6 77 50.6
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 3.9e-08 65.1 192 27.1
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.6e-06 59.7 36 80.6
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 1.6e-06 59.7 158 27.2
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 6.2e-06 57.8 171 32.2


User provided reference genes

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