Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 3.0e-207 724.9 364 100.0
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 3.5e-171 605.1 364 81.9
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.7e-165 586.3 388 76.8
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 7.7e-163 577.4 364 79.1
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 3.0e-159 565.5 364 77.7
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 6.8e-159 564.3 364 76.6
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-158 563.1 364 77.2
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.7e-157 559.7 365 78.9
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.8e-157 558.9 363 78.0
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 3.7e-157 558.5 364 76.9
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.8e-156 556.2 364 77.2
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.8e-156 556.2 364 76.9
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.7e-155 552.4 357 77.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.3e-154 549.3 364 76.1
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.3e-154 549.3 364 75.5
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 6.6e-154 547.7 364 76.6
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 6.6e-154 547.7 364 75.3
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 8.6e-154 547.4 367 75.5
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.6e-154 547.4 364 76.6
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.5e-153 546.6 364 76.4
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.9e-153 546.2 364 75.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 9.5e-153 543.9 364 76.9
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.6e-152 542.0 374 73.5
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 4.7e-152 541.6 364 76.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.4e-151 540.0 380 72.1
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.4e-151 540.0 362 74.3
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 8.9e-151 537.3 364 75.5
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.9e-151 537.3 364 75.8
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.9e-151 537.3 364 75.8
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.0e-150 536.2 364 74.7
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 3.4e-150 535.4 368 74.7
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.8e-148 529.6 367 74.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.1e-148 528.9 366 74.9
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 4.1e-148 528.5 364 71.4
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.3e-146 522.7 364 71.4
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.3e-146 522.7 364 73.6
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 2.9e-146 522.3 364 72.8
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 3.8e-146 521.9 364 72.8
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 5.0e-146 521.5 364 72.0
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.5e-145 519.2 364 72.3
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 4.3e-145 518.5 364 70.9
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.6e-145 518.1 364 72.0
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 7.3e-145 517.7 364 72.0
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 9.5e-145 517.3 365 71.0
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.1e-144 516.2 364 70.9
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.1e-144 516.2 365 71.0
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 6.1e-144 514.6 364 71.4
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 8.0e-144 514.2 364 71.7
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.0e-143 513.8 364 70.3
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.3e-143 512.7 367 73.8
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 4.0e-143 511.9 365 70.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 8.9e-143 510.8 364 69.8
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 8.9e-143 510.8 364 69.8
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.2e-142 510.4 363 71.9
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 2.9e-141 505.8 307 81.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.7e-141 505.4 369 70.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 6.4e-141 504.6 365 70.7
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 6.4e-141 504.6 361 70.9
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.4e-140 503.4 361 70.9
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 3.2e-140 502.3 365 69.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 7.8e-139 497.7 364 70.3
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.0e-138 497.3 366 70.2
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.3e-138 496.9 365 70.7
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.0e-138 495.7 366 68.0
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 4.3e-137 491.9 364 69.5
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.1e-136 489.6 364 68.7
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 4.7e-136 488.4 364 69.0
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.0e-136 487.6 337 71.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 4.0e-135 485.3 363 68.9
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 8.9e-135 484.2 367 69.2
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.5e-134 483.4 364 71.2
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.2e-133 479.6 364 67.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.9e-133 479.2 365 68.5
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.4e-133 478.0 366 68.9
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.1e-132 477.2 364 66.8
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.9e-132 476.5 364 67.9
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 4.1e-132 475.3 366 68.6
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 5.4e-132 474.9 366 68.3
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.6e-131 471.9 365 67.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.3e-130 470.3 365 68.2
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.3e-130 470.3 364 66.2
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.7e-130 469.9 365 67.7
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.3e-130 469.5 391 63.9
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.6e-130 468.0 366 68.6
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.1e-129 467.2 356 68.0
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.5e-129 466.8 364 68.1
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.5e-129 466.8 367 66.5
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.9e-129 466.5 372 66.1
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.3e-129 465.7 391 63.9
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 8.9e-127 457.6 333 72.1
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.4e-124 449.5 320 71.6
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.5e-121 437.6 369 64.0
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 3.6e-120 435.6 366 61.7
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.9e-119 431.0 357 63.9
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 7.8e-115 417.9 378 59.5
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 2.5e-113 412.9 302 70.5
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 4.3e-113 412.1 277 73.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.3e-112 410.6 379 57.8
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 3.1e-111 406.0 369 59.1
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.0e-110 403.3 361 60.9
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 4.4e-110 402.1 364 60.4
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.2e-107 394.0 341 60.4
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-106 390.2 378 59.3
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.7e-106 390.2 364 59.9
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 4.3e-105 385.6 385 51.7
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.2e-102 377.5 245 76.7
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 6.2e-96 355.1 308 57.8
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.1e-84 317.8 369 46.1
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.4e-84 317.4 364 52.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.2e-84 315.8 277 59.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 4.6e-83 312.4 361 47.9
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 4.6e-75 285.8 422 42.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.4e-74 284.3 215 65.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 9.4e-68 261.5 167 77.2
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 6.7e-66 255.4 173 72.8
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.1e-65 254.6 362 45.9
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 5.7e-65 252.3 198 66.2
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 5.7e-65 252.3 196 65.3
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 7.7e-62 241.9 170 72.9
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 2.1e-59 233.8 213 58.2
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 4.7e-51 206.1 161 67.1
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.1e-47 193.0 122 79.5
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.1e-47 193.0 148 68.9
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.0e-45 188.3 122 77.9
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 8.0e-43 178.7 166 59.6
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 3.0e-42 176.8 200 50.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 5.2e-42 176.0 309 40.1
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 5.2e-42 176.0 256 42.2
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-37 161.8 139 63.3
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.2e-36 155.6 122 68.0
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.0e-33 147.5 185 43.8
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.4e-33 146.4 141 57.4
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-29 135.2 139 56.1
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.1e-27 127.5 114 59.6
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 6.0e-22 109.4 72 76.4
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.3e-21 108.2 72 72.2
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.1e-20 105.1 82 64.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 2.5e-20 104.0 387 25.3
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-18 98.2 134 38.8
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 7.5e-17 92.4 77 58.4
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 7.1e-15 85.9 405 24.7


User provided reference genes

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